Bioinformatics Stack Exchange is a question and answer site for researchers, developers, students, teachers, and end users interested in bioinformatics. It only takes a minute to sign up.

Sign up to join this community
Anybody can ask a question
Anybody can answer
The best answers are voted up and rise to the top

Top Questions

5 votes
4 answers
2k views

How to map PDB chains to Uniprot IDs using API services

0 votes
0 answers
4 views

How to promote assemblies into genomes in NCBI?

1 vote
1 answer
30 views

Nested variable expansion in WDL code block

0 votes
0 answers
4 views

Mapping PDB ID + chain ID to UniProt ID

2 votes
1 answer
56 views

Find SNPs in yeast genomes

2 votes
1 answer
677 views

Which values from Seurat::FetchData function are to be used for correlation analysis between genes?

1 vote
1 answer
1k views

Wrong format .ped in PLINK

1 vote
1 answer
39 views

Differentiating molecules based on peptide sequence? How to annotate?

4 votes
2 answers
81 views

Does the number of RNA reads per cell obtained from the 10X scRNA experiment depend on amount of mRNA in given cell?

0 votes
0 answers
9 views

Warning message related to tensorflow package when trying to run deepbgc bioinformatics tool

0 votes
0 answers
10 views

How can I get the HGVS notation of a mutation from a FASTA?

0 votes
0 answers
12 views

reliable and popular HLA imputation tools

1 vote
2 answers
107 views

Chromosome information for miRNA

0 votes
1 answer
27 views

Why are genetic algorithm chromosomes represented using 8 bit binary?

1 vote
1 answer
71 views

Extracting base sequences from ABI/AB1 sanger sequencing chromatogram

0 votes
1 answer
133 views

How do I color selective residues on the surface of a protein in pymol?

1 vote
1 answer
94 views

Step-by-Step Construction of Gene Co-expression Networks from High-Throughput Arabidopsis RNA Sequencing Data

1 vote
1 answer
30 views

How to get started with louvain/leiden algorithm with UMAP in R

7 votes
3 answers
1k views

Getting the licenses of all conda installed packages

2 votes
1 answer
52 views

pip installation within conda env: Error downgrading scikit-learn - WARNING: No metadata

1 vote
1 answer
14 views

Bulk protein annotation with Prokka

0 votes
1 answer
64 views

Error while Importing fastq sequences to jMHC software

1 vote
0 answers
19 views

Identifying highly variable genes in scRNA-seq: Seurat vs M3Drop

3 votes
1 answer
23 views

Does cutadapt trim trailing N's first and then use max_n to filter reads?

0 votes
0 answers
12 views

How to use a .out Kraken output format

0 votes
1 answer
28 views

Filtering reads greater than 5 from HT-seq count files

1 vote
1 answer
118 views

include a glimma interface in a shiny app

1 vote
3 answers
59 views

How can I assemble my genome from raw files?

0 votes
1 answer
31 views

Make mpileup file with several BAM files

0 votes
0 answers
13 views

MLPE in lmer (lme4 in R)

3 votes
1 answer
24 views

How to improve this WGCNA analysis

0 votes
1 answer
42 views

select highly variable genes out of dataframe

3 votes
2 answers
53 views

Searching for HLA-B in DNA results

2 votes
0 answers
22 views

Writing to .cif from BioPandas

0 votes
0 answers
21 views

Error when zipping 2 arrays of files-Cannot interpolate Array[Pair[File, File]] into a command string with attribute set "[PlaceholderAttributeSet

2 votes
0 answers
61 views

Naming conventions for kegg nodes with multiple genes

0 votes
1 answer
19 views

Repeating indexes of atoms in PDB file

2 votes
2 answers
80 views

Parsing a genbank file and outputting specific feature information to a csv using BioPython

3 votes
0 answers
64 views

Is there a baby Hello World example using BIGstack?

1 vote
1 answer
47 views

Select synonymous sites from a multiple sequence alignment

0 votes
1 answer
65 views

convert GT:PL format to GT:GP format

3 votes
1 answer
141 views

Details of ENCODE processing pipelines

1 vote
1 answer
40 views

Lower case vs. upper case nucleotids in sequence vs. dots at the end

2 votes
2 answers
369 views

Differentially expressed genes analysis in Seurat

1 vote
1 answer
21 views

KEGG retrieve hierarchy for organism in biopython

5 votes
2 answers
317 views

How can I work out gram staining information from the species name?

1 vote
1 answer
69 views

Bonferroni count = 1 in GO-Slim overrepresentation test (PANTHER) is it possible?

1 vote
0 answers
21 views

Cannot run `loadData()` after saving RDS file and reading RDS file using `saveRDS` & `readRDS` in Seurat


Looking for more? Browse the complete list of questions, or popular tags. Help us answer unanswered questions.