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Top Questions

1 vote
1 answer
48 views

Filtering criteria for non-coding features with very low counts

0 votes
1 answer
7 views

How can I convert a BED file to GTF/GFF with gene_ids?

0 votes
1 answer
53 views

General question: How to assign my SNP (Wheat, Illumina 15K) to specific chromosomes?

1 vote
1 answer
564 views

Heatmap annotation with value and colour gradient

2 votes
1 answer
134 views

working with cutadapt

0 votes
0 answers
5 views

How to identify phages from Phaster in PhageDB

2 votes
1 answer
33 views

Can you recommend me some programs or R packages for species distribution modelling?

1 vote
0 answers
8 views

MMSeqs taxonomy running for over a day

1 vote
2 answers
538 views

Plotting infercnv results

1 vote
1 answer
26 views

Kallisto RNA-seq errors because of incompatible indices when running <kallisto quant> using downloaded mouse index

1 vote
1 answer
63 views

AttributeError [in fastStructure's chooseK.py]: module 'vars' has no attribute 'insum'

2 votes
1 answer
27 views

Does using a microarray chip that matches the chip used in training lead to higher explained variance of a polygenic score?

1 vote
1 answer
53 views

stacked barplot with error bars

1 vote
0 answers
77 views

bwa mem hangs after a few thousand reads

1 vote
1 answer
93 views

bcbio run not running samples in parallel

0 votes
1 answer
61 views

issue with rna seq analysis

3 votes
2 answers
620 views

Why Do I Get Different Results Each Time From AutoDock Vina?

1 vote
0 answers
8 views

What are the applications of Tries(data structure) of an ordered sequence of strings in bioinformatics?

0 votes
2 answers
45 views

How to run a GATK Docker Image with local files?

0 votes
0 answers
5 views

Which molecular interaction (MI) terms refer to dierct binary interaction detection techniques?

0 votes
0 answers
23 views

Generating force-fields for ANY residue

3 votes
1 answer
346 views

"perl: warning: Setting locale failed." in RepeatMasker

2 votes
2 answers
124 views

How to add charges to a PDB file?

1 vote
1 answer
106 views

Problem with setting fixed topology for MrBayes

1 vote
1 answer
421 views

Is there a way to use BioLemmatizer from Python?

6 votes
1 answer
2k views

Index a BAM file using pysam

1 vote
0 answers
39 views

Energy error margin for protein structures

2 votes
1 answer
110 views

Error Registering Job Definition AWS

0 votes
1 answer
34 views

GO Enrichment Analysis

0 votes
0 answers
29 views

ERROR IN FUNCOTATOR: [SQLITE_IOERR_LOCK] I/O error in the advisory file locking logic (disk I/O error)

0 votes
0 answers
34 views

Generate simulated bam for certain snps

1 vote
0 answers
359 views

How to choose the proper way to analyze the differential binding peaks among different samples for ChIP-seq? DiffBind or CSAW?

1 vote
0 answers
80 views

Eigen phred score interpretation

1 vote
1 answer
27 views

PANTHER FUNCTIONAL CLASSIFICATION in R

0 votes
1 answer
59 views

Is outlier detection the right choice for determining if a value lies significantly away from the mean in a population in gene frequency?

2 votes
1 answer
278 views

Read alignment using Bowtie2

1 vote
1 answer
47 views

Convert ensemble genes to gene names in my sigle cell signature matrix annotated with seurat in R?

3 votes
1 answer
150 views

Estimating computing resources needed for a GWAS?

0 votes
2 answers
40 views

How long should it take to cluster Uniref?

3 votes
1 answer
225 views

Get genomic coordinates using GenomicFeatures by HGNC gene names

-1 votes
0 answers
25 views

How can I convert ecat(.v) file to nifti(.nii) file in python?

2 votes
0 answers
35 views

How to perform liftover from 38 to 37 in R?

1 vote
0 answers
15 views

(Complete) Stuctural Models of Antibodies: Combining Fc and Fab from pdb to Build Hinge Region? Or what?

2 votes
1 answer
92 views

Where to access the WGCNA tutorial documents: Horvath lab site down

1 vote
1 answer
38 views

Get a certain gene sequence from bam/vcf and reference

0 votes
1 answer
44 views

Does AlphaFold actually calculates the fold?

1 vote
1 answer
71 views

How do I calculate inbreeding on a single VCF file?

0 votes
1 answer
46 views

Are there applications of semi-supervised learning to genomics?


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