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Top Questions

1 vote
1 answer
20 views

Overlay pathway over a set of genes in Cytoscape

4 votes
1 answer
63 views

Replicating VCF Filtering & Trait-Based SNP Extraction Workflow

-1 votes
1 answer
27 views

how to see pacbio reads in IGV

3 votes
2 answers
1k views

How does DeepVariant construct RGB images from DNA sequences?

3 votes
4 answers
2k views

Retrieving NCBI Taxa IDs from refseq or GenBank assembly accession

1 vote
1 answer
15 views

Where to obtain fastq_illumina_filter

2 votes
1 answer
19 views

GBS- 'Failure' in, Per base sequence content, Sequence Duplication Levels, and Adapter Content

1 vote
1 answer
32 views

Indexing the reference genome my process is killed

3 votes
2 answers
46 views

Issues with adapter trimming (Trim Galore)

1 vote
2 answers
35 views

Are there efficient tools for PANGENOMES visualization (GFA size >2GB)?

1 vote
0 answers
37 views

How much should the 5' adapter and i7 sequence differ?

0 votes
1 answer
144 views

Error downloading GSE dataset

3 votes
1 answer
24 views

Fixation index calculation from the vcf files

1 vote
1 answer
33 views

Area under the curve at each time point

1 vote
1 answer
79 views

Visualise multiple disappearing pdb files in Pymol

2 votes
1 answer
18 views

In snakemake, get input from output, after an expand

1 vote
1 answer
108 views

Single or partitioned model for supermatrix tree inference?

5 votes
1 answer
237 views

UPGMA computation

0 votes
1 answer
73 views

What is a common number of cells per cell type in single cell RNA Seq?

0 votes
1 answer
17 views

Error in Load Data in GSEA 4.3.3

3 votes
2 answers
44 views

Converting Gene Symbols to Entrez ID in ambiguous cases

1 vote
2 answers
47 views

Python/R/bash script to ease the comparison of different protein complexes in PDB

1 vote
1 answer
84 views

Selection analysis based on each leaves as foreground with FastCodeML

0 votes
0 answers
17 views

Why don't we use a multivariate (all genes) model for differential expression analysis?

3 votes
2 answers
70 views

Running multiple sequence using spades.py on an HPC

2 votes
0 answers
13 views

How do I mount resource directories into my docker image via Cromwell / WDL?

2 votes
2 answers
33 views

Where can I get hg38 Copy number Variation (CNV) file?

1 vote
0 answers
15 views

Binning then assembling sequencing reads

2 votes
1 answer
48 views

Parsimony-distance neighborhoods in tree space

1 vote
0 answers
17 views

How to know protomter position in the chromosome?

2 votes
2 answers
25 views

true depth per gvcf location instead of min depth per gvcf block

1 vote
1 answer
39 views

Is there any standardized and ready-to-use dataset available online for download regarding protein geometry? [closed]

0 votes
0 answers
21 views

Is there any technique that I can use to achieve the required computation without reading all 10 million rows?

2 votes
1 answer
355 views

How to calculate average BLOSUM62 scores?

1 vote
1 answer
472 views

Create GFF3 feature exporter

1 vote
1 answer
40 views

Low confidence score from alphafold2_multimer_v3

1 vote
1 answer
133 views

What statistical test to apply for DE after CibersortX deconvolution?

3 votes
1 answer
64 views

RNA-seq QC and alignment error in script

2 votes
2 answers
49 views

Reasons for extremely low number of DESeq identified differentially expressed genes after RNAseq?

0 votes
1 answer
25 views

getGEO not working

1 vote
1 answer
76 views

What is the best way to perform batch ajustment between two experiments?

3 votes
1 answer
139 views

Should be RT-qPCR values standardized before PCA analysis?

3 votes
1 answer
42 views

BLAST Database error: No alias or index file found for nucleotide database

0 votes
1 answer
50 views

pacbio demultiplexing issue

2 votes
2 answers
618 views

How fo force nextflow to repeat a process until all values in a particular channels are used up BUT a single value from another channel is needed

1 vote
1 answer
46 views

Differences between Gencode GTF and Ensembl GTF files

1 vote
2 answers
520 views

Convert ensemble genes to gene names in my sigle cell signature matrix annotated with seurat in R?


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