Bioinformatics Stack Exchange

1 vote

1 answer

48 views

Filtering criteria for non-coding features with very low counts

CommunityBot

1

modified 3 hours ago

0 votes

1 answer

7 views

How can I convert a BED file to GTF/GFF with gene_ids?

Alejandro Gonzales-Irribarren

21

answered 3 hours ago

0 votes

1 answer

53 views

General question: How to assign my SNP (Wheat, Illumina 15K) to specific chromosomes?

CommunityBot

1

modified 20 hours ago

1 vote

1 answer

564 views

Heatmap annotation with value and colour gradient

CommunityBot

1

modified 21 hours ago

2 votes

1 answer

134 views

working with cutadapt

CommunityBot

1

modified 23 hours ago

0 votes

0 answers

5 views

How to identify phages from Phaster in PhageDB

Amy

1

asked yesterday

2 votes

1 answer

33 views

Can you recommend me some programs or R packages for species distribution modelling?

CommunityBot

1

modified yesterday

1 vote

0 answers

8 views

MMSeqs taxonomy running for over a day

Rainman

151

asked yesterday

1 vote

2 answers

538 views

Plotting infercnv results

CommunityBot

1

modified yesterday

1 vote

1 answer

26 views

Kallisto RNA-seq errors because of incompatible indices when running <kallisto quant> using downloaded mouse index

ATpoint

1,108

answered 2 days ago

1 vote

1 answer

63 views

AttributeError [in fastStructure's chooseK.py]: module 'vars' has no attribute 'insum'

CommunityBot

1

modified 2 days ago

2 votes

1 answer

27 views

Does using a microarray chip that matches the chip used in training lead to higher explained variance of a polygenic score?

CommunityBot

1

modified 2 days ago

1 vote

1 answer

53 views

stacked barplot with error bars

Maximilian Press

3,804

answered Nov 29 at 19:57

1 vote

0 answers

77 views

bwa mem hangs after a few thousand reads

padakpatek

19

modified Nov 29 at 19:44

1 vote

1 answer

93 views

bcbio run not running samples in parallel

CommunityBot

1

modified Nov 29 at 18:04

0 votes

1 answer

61 views

issue with rna seq analysis

ATpoint

1,108

answered Nov 29 at 16:02

3 votes

2 answers

620 views

Why Do I Get Different Results Each Time From AutoDock Vina?

Matteo Ferla

4,234

modified Nov 29 at 15:06

1 vote

0 answers

8 views

What are the applications of Tries(data structure) of an ordered sequence of strings in bioinformatics?

GEP

111

asked Nov 28 at 21:10

0 votes

2 answers

45 views

How to run a GATK Docker Image with local files?

rimo

923

modified Nov 28 at 18:13

0 votes

0 answers

5 views

Which molecular interaction (MI) terms refer to dierct binary interaction detection techniques?

kate allerton

1

asked Nov 28 at 16:27

0 votes

0 answers

23 views

Generating force-fields for ANY residue

JaktensTid

101

modified Nov 28 at 16:21

3 votes

1 answer

346 views

"perl: warning: Setting locale failed." in RepeatMasker

CommunityBot

1

modified Nov 28 at 16:02

2 votes

2 answers

124 views

How to add charges to a PDB file?

Maximilian Press

3,804

modified Nov 27 at 19:54

1 vote

1 answer

106 views

Problem with setting fixed topology for MrBayes

CommunityBot

1

modified Nov 26 at 22:03

1 vote

1 answer

421 views

Is there a way to use BioLemmatizer from Python?

CommunityBot

1

modified Nov 26 at 19:03

6 votes

1 answer

2k views

Index a BAM file using pysam

anju

1

modified Nov 26 at 2:28

1 vote

0 answers

39 views

Energy error margin for protein structures

pippo1980

955

modified Nov 25 at 13:34

2 votes

1 answer

110 views

Error Registering Job Definition AWS

CommunityBot

1

modified Nov 25 at 5:01

0 votes

1 answer

34 views

GO Enrichment Analysis

CommunityBot

1

modified Nov 25 at 4:06

0 votes

0 answers

29 views

ERROR IN FUNCOTATOR: [SQLITE_IOERR_LOCK] I/O error in the advisory file locking logic (disk I/O error)

terdon♦

9,662

modified Nov 24 at 18:15

0 votes

0 answers

34 views

Generate simulated bam for certain snps

gringer♦

13.8k

modified Nov 24 at 5:28

1 vote

0 answers

359 views

How to choose the proper way to analyze the differential binding peaks among different samples for ChIP-seq? DiffBind or CSAW?

Kylie M.

1

modified Nov 23 at 23:34

1 vote

0 answers

80 views

Eigen phred score interpretation

terdon♦

9,662

modified Nov 23 at 14:25

1 vote

1 answer

27 views

PANTHER FUNCTIONAL CLASSIFICATION in R

Jacob Krol

11

modified Nov 23 at 0:36

0 votes

1 answer

59 views

Is outlier detection the right choice for determining if a value lies significantly away from the mean in a population in gene frequency?

CommunityBot

1

modified Nov 22 at 9:05

2 votes

1 answer

278 views

Read alignment using Bowtie2

CommunityBot

1

modified Nov 21 at 18:05

1 vote

1 answer

47 views

Convert ensemble genes to gene names in my sigle cell signature matrix annotated with seurat in R?

terdon♦

9,662

modified Nov 21 at 14:11

3 votes

1 answer

150 views

Estimating computing resources needed for a GWAS?

CommunityBot

1

modified Nov 21 at 14:04

0 votes

2 answers

40 views

How long should it take to cluster Uniref?

M__♦

11.9k

modified Nov 21 at 13:17

3 votes

1 answer

225 views

Get genomic coordinates using GenomicFeatures by HGNC gene names

CommunityBot

1

modified Nov 21 at 9:01

-1 votes

0 answers

25 views

How can I convert ecat(.v) file to nifti(.nii) file in python?

user18593

1

asked Nov 21 at 5:45

2 votes

0 answers

35 views

How to perform liftover from 38 to 37 in R?

Ram RS

2,086

modified Nov 20 at 19:30

1 vote

0 answers

15 views

(Complete) Stuctural Models of Antibodies: Combining Fc and Fab from pdb to Build Hinge Region? Or what?

LameSloth

11

asked Nov 20 at 18:00

2 votes

1 answer

92 views

Where to access the WGCNA tutorial documents: Horvath lab site down

Peter Langfelder

936

answered Nov 20 at 14:31

1 vote

1 answer

38 views

Get a certain gene sequence from bam/vcf and reference

terdon♦

9,662

modified Nov 20 at 10:56

0 votes

1 answer

44 views

Does AlphaFold actually calculates the fold?

M__♦

11.9k

modified Nov 20 at 10:52

1 vote

1 answer

71 views

How do I calculate inbreeding on a single VCF file?

CommunityBot

1

modified Nov 20 at 8:02

0 votes

1 answer

46 views

Are there applications of semi-supervised learning to genomics?

M__♦

11.9k

modified Nov 20 at 0:33

Top Questions

Looking for more? Browse the complete list of questions, or popular tags. Help us answer unanswered questions.