Hottest Questions Today

1 vote

1 answer

26 views

Kallisto RNA-seq errors because of incompatible indices when running <kallisto quant> using downloaded mouse index

ATpoint

1,108

answered 2 days ago

1 vote

0 answers

77 views

bwa mem hangs after a few thousand reads

padakpatek

19

modified Nov 29 at 19:44

0 votes

1 answer

61 views

issue with rna seq analysis

ATpoint

1,108

answered Nov 29 at 16:02

0 votes

0 answers

23 views

Generating force-fields for ANY residue

JaktensTid

101

modified Nov 28 at 16:21

1 vote

1 answer

53 views

stacked barplot with error bars

Maximilian Press

3,804

answered Nov 29 at 19:57

1 vote

0 answers

39 views

Energy error margin for protein structures

pippo1980

955

modified Nov 25 at 13:34

1 vote

0 answers

80 views

Eigen phred score interpretation

terdon♦

9,662

modified Nov 23 at 14:25

2 votes

1 answer

92 views

Where to access the WGCNA tutorial documents: Horvath lab site down

Peter Langfelder

936

answered Nov 20 at 14:31

0 votes

0 answers

29 views

ERROR IN FUNCOTATOR: [SQLITE_IOERR_LOCK] I/O error in the advisory file locking logic (disk I/O error)

terdon♦

9,662

modified Nov 24 at 18:15

0 votes

0 answers

34 views

Generate simulated bam for certain snps

gringer♦

13.8k

modified Nov 24 at 5:28

2 votes

2 answers

124 views

How to add charges to a PDB file?

Maximilian Press

3,804

modified Nov 27 at 19:54

1 vote

1 answer

38 views

Get a certain gene sequence from bam/vcf and reference

terdon♦

9,662

modified Nov 20 at 10:56

0 votes

2 answers

40 views

How long should it take to cluster Uniref?

M__♦

11.9k

modified Nov 21 at 13:17

1 vote

1 answer

47 views

Convert ensemble genes to gene names in my sigle cell signature matrix annotated with seurat in R?

terdon♦

9,662

modified Nov 21 at 14:11

0 votes

1 answer

46 views

Are there applications of semi-supervised learning to genomics?

M__♦

11.9k

modified Nov 20 at 0:33

-1 votes

0 answers

25 views

How can I convert ecat(.v) file to nifti(.nii) file in python?

user18593

1

asked Nov 21 at 5:45

1 vote

1 answer

27 views

PANTHER FUNCTIONAL CLASSIFICATION in R

Jacob Krol

11

modified Nov 23 at 0:36

0 votes

2 answers

45 views

How to run a GATK Docker Image with local files?

rimo

923

modified Nov 28 at 18:13

2 votes

1 answer

75 views

Mitochondrial genes - TPM calculation bulk RNA-Seq

gringer♦

13.8k

modified Nov 19 at 6:04

0 votes

1 answer

80 views

Statistical approach to link DNA methylation with toxic element exposure and health outcome

M__♦

11.9k

answered Nov 18 at 23:58

0 votes

1 answer

44 views

Does AlphaFold actually calculates the fold?

M__♦

11.9k

modified Nov 20 at 10:52

2 votes

0 answers

35 views

How to perform liftover from 38 to 37 in R?

Ram RS

2,086

modified Nov 20 at 19:30

2 votes

2 answers

57 views

Sequence Alignment for sequences with the same length

Chris_Rands

3,928

answered Nov 17 at 8:10

1 vote

0 answers

15 views

(Complete) Stuctural Models of Antibodies: Combining Fc and Fab from pdb to Build Hinge Region? Or what?

LameSloth

11

asked Nov 20 at 18:00

-2 votes

3 answers

82 views

Filtering columns from large file based on a column list

Ram RS

2,086

modified Nov 13 at 16:37

3 votes

1 answer

35 views

biomarRT conversion of symbols

Ram RS

2,086

modified Nov 16 at 20:29

0 votes

1 answer

23 views

getting NCBI TAXname by R

Ram RS

2,086

modified Nov 16 at 20:28

1 vote

1 answer

93 views

bcbio run not running samples in parallel

CommunityBot

1

modified Nov 29 at 18:04

2 votes

2 answers

67 views

What is the best Query to retrieve DNA from NCBI?

terdon♦

9,662

modified Nov 13 at 16:02

2 votes

0 answers

43 views

How to incorporate negative controls in DESeq2

gringer♦

13.8k

modified Nov 15 at 7:11

-1 votes

0 answers

32 views

How to create positive and negative Bar Graph

Ram RS

2,086

modified Nov 15 at 14:54

1 vote

1 answer

88 views

Mendelian randomization

M__♦

11.9k

modified Nov 13 at 14:24

2 votes

1 answer

27 views

Does using a microarray chip that matches the chip used in training lead to higher explained variance of a polygenic score?

CommunityBot

1

modified 2 days ago

0 votes

0 answers

13 views

Estimating rate of evolution from a phylogeny

Nitara Wijayatilake

1

modified Nov 17 at 14:39

0 votes

0 answers

59 views

Convert genotyping results to vcf or other plink formats

Alice Yan

1

modified Nov 12 at 8:48

1 vote

1 answer

44 views

Intepreting and applying ordinal logistic regression coefficients to calculate probabilities?

Charles

537

modified Nov 10 at 21:10

1 vote

1 answer

26 views

Confirming Identity of clone in Phylogeny

M__♦

11.9k

answered Nov 15 at 9:36

0 votes

0 answers

45 views

how to use CIBERSORT

gringer♦

13.8k

modified Nov 10 at 4:22

2 votes

0 answers

33 views

Racon: empty overlap set!

gringer♦

13.8k

modified Nov 15 at 9:46

1 vote

0 answers

30 views

Need help with binding DB API

Neeleshwar Pandey

69

modified Nov 11 at 8:20

0 votes

1 answer

34 views

GO Enrichment Analysis

CommunityBot

1

modified Nov 25 at 4:06

1 vote

1 answer

28 views

How many Ns and ns in GRCh37 / GRCh38 per 'canonical' chromosome?

terdon♦

9,662

modified Nov 8 at 15:45

1 vote

1 answer

48 views

Downloading a list of all RCSB-PDB entries

marcin

1,261

answered Nov 5 at 13:47

1 vote

2 answers

51 views

How can I limit blast results to exclude a specific taxonomic ID?

M__♦

11.9k

modified Nov 5 at 14:33

2 votes

1 answer

27 views

retrieving past BLAST requests in bioPython

Rachel Sweeney

31

answered Nov 13 at 14:46

0 votes

1 answer

30 views

VEP annotation INFO field Ensembl IDs and locations

Ram RS

2,086

answered Nov 6 at 18:21

2 votes

1 answer

41 views

Getting ALL Protein entries from Entrez for a particular taxonomic id

The August

203

answered Nov 3 at 16:46

0 votes

0 answers

21 views

Unable to access error logs of failed cromwell execution (WDL) in local machine running in ubuntu environment

Jivesh Singh

1

asked Nov 8 at 8:29

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