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Top Questions

3 votes
2 answers
36 views

Remote blastn - what is breaking my (bash) loop?

0 votes
0 answers
20 views

extracting raw gene counts based on the cluster generated by seurat

0 votes
1 answer
25 views

How is an X chromosome encoded into a fasta string?

1 vote
1 answer
19 views

How to add N bases to PyRange object (i.e., shifting PyRanges coordinates)

1 vote
1 answer
38 views

Warning message related to tensorflow package when trying to run deepbgc bioinformatics tool

1 vote
0 answers
12 views

What visualization was used for ICA in the tissue experiment?

0 votes
0 answers
22 views

Extracting part of columns in data frame

4 votes
1 answer
29 views

How to promote assemblies into genomes in NCBI?

0 votes
1 answer
28 views

Why are genetic algorithm chromosomes represented using 8 bit binary?

0 votes
0 answers
14 views

reliable and popular HLA imputation tools

0 votes
0 answers
11 views

How can I get the HGVS notation of a mutation from a FASTA?

1 vote
1 answer
33 views

How to get started with louvain/leiden algorithm with UMAP in R

2 votes
1 answer
52 views

pip installation within conda env: Error downgrading scikit-learn - WARNING: No metadata

1 vote
1 answer
33 views

Nested variable expansion in WDL code block

3 votes
1 answer
23 views

Does cutadapt trim trailing N's first and then use max_n to filter reads?

1 vote
3 answers
62 views

How can I assemble my genome from raw files?

1 vote
1 answer
14 views

Bulk protein annotation with Prokka

0 votes
1 answer
32 views

Make mpileup file with several BAM files

1 vote
0 answers
24 views

Identifying highly variable genes in scRNA-seq: Seurat vs M3Drop

0 votes
1 answer
46 views

select highly variable genes out of dataframe

0 votes
1 answer
34 views

Filtering reads greater than 5 from HT-seq count files

3 votes
2 answers
55 views

Searching for HLA-B in DNA results

3 votes
1 answer
27 views

How to improve this WGCNA analysis

1 vote
0 answers
17 views

Recode bgen files against reference genome

0 votes
0 answers
12 views

How to use a .out Kraken output format

2 votes
2 answers
84 views

Parsing a genbank file and outputting specific feature information to a csv using BioPython

2 votes
0 answers
25 views

Writing to .cif from BioPandas

0 votes
0 answers
13 views

MLPE in lmer (lme4 in R)

0 votes
0 answers
23 views

Error when zipping 2 arrays of files-Cannot interpolate Array[Pair[File, File]] into a command string with attribute set "[PlaceholderAttributeSet

0 votes
1 answer
65 views

convert GT:PL format to GT:GP format

1 vote
1 answer
38 views

Visualize RNA co-folded secondary structure with Python

1 vote
1 answer
21 views

KEGG retrieve hierarchy for organism in biopython

2 votes
2 answers
43 views

WCGNA - Relate modules with Y features when the % of variance explained of each eigengen is low

1 vote
1 answer
42 views

Advise on building an effect ML model for predicting important proteins for drug response

1 vote
0 answers
21 views

Cannot run `loadData()` after saving RDS file and reading RDS file using `saveRDS` & `readRDS` in Seurat

2 votes
0 answers
65 views

Adapter trimming

3 votes
1 answer
42 views

How does one distinguish nuclear DNA from mitochondrial DNA when doing WGS?

0 votes
1 answer
53 views

Merge/Join one data frame (X) to multiple data frames separately

2 votes
0 answers
65 views

Naming conventions for kegg nodes with multiple genes

2 votes
0 answers
14 views

I am trying to use slingshot for pseudotime analysis. I am getting error while saving an object as dataframe

4 votes
0 answers
76 views

Write a bash script to run gatk, fix errors with input, and rerun until completion

0 votes
1 answer
34 views

Building a group representation of genes' ontologies

2 votes
1 answer
60 views

Find SNPs in yeast genomes

1 vote
1 answer
50 views

Gencode PolyA feature annotation GTF gene_id not the same as Comprehensive gene annotation GTF

2 votes
1 answer
20 views

need bam file for pilon

1 vote
1 answer
46 views

How to chop fasta / bed /peak file genomic segments into smaller fixed or custom genomic intervals

2 votes
1 answer
24 views

Coordinate numbering between forward (+) and reverse (-) strand in Tombo

3 votes
0 answers
45 views

Aligning PacBio HiFi reads to reference genome using pbmm2


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