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Top Questions

0 votes
1 answer
243 views

Looping over a list of cell models in Python

3 votes
2 answers
70 views

efetch multiple records at once

3 votes
1 answer
71 views

How to analyze GC content of fasta file?

0 votes
1 answer
90 views

How to pack up a Python script in the form a Dockerfile

0 votes
1 answer
65 views

Ordering average of gene expression in heat map

1 vote
2 answers
103 views

Why does DNABert use overlapping k-mers as input?

3 votes
2 answers
61 views

Remote NCBI's Blast Perl API: maximising hits returned via command line

2 votes
2 answers
40 views

paired-end short reads: will one file suffice?

1 vote
1 answer
60 views

Export multiple variables from shell script into a Nextflow output channel

3 votes
1 answer
77 views

Trimmomatic QC report shows drop in the reads and presence of overrepresented sequences

3 votes
1 answer
36 views

Why does the subset of rows that match a condition added by the rows that don't match a condition not add up to the total number of rows?

1 vote
1 answer
75 views

Would DESeq2 be appropriate or should I use another tool for differential gene expression?

-2 votes
1 answer
70 views

For loop in Python goes wrong

1 vote
2 answers
50 views

Predict population based on PC coordinates

1 vote
1 answer
50 views

What options are there for visualising DNA sequences?

1 vote
1 answer
35 views

Do we design primers for single stranded DNA with same criteria as we do for double stranded DNA?

0 votes
0 answers
70 views

What is happening in the Zuker-Algorithm

0 votes
0 answers
69 views

Old program make error ProtDeform

0 votes
1 answer
51 views

Genetic relationships between Cyanobacteria: terrestrial vs aquatic

1 vote
1 answer
58 views

Using average of sequence similarities when delimiting genera - how to deal with outliers?

2 votes
0 answers
57 views

Shell script to validate fastq issue

1 vote
1 answer
56 views

Changing transparency of markers in Chimera X

-1 votes
0 answers
54 views

How to analyze gff file?

3 votes
1 answer
31 views

Error output in nextflow pipeline using fasterq-dump

0 votes
1 answer
30 views

How to find amino acid sequence of a given protein

1 vote
1 answer
37 views

How should I use dorado basecaller to calculate translocation time? Can I change models' config files?

1 vote
1 answer
26 views

I am trying to create a subset of 10k variants from 25-30 unmapped contigs of a g.vcf file including the header

1 vote
1 answer
30 views

Align two different structures with respect to their active sites or heme cofactor

1 vote
1 answer
23 views

Identifying the promoter on the reverse strand using visualization software (seqmonk)

1 vote
1 answer
29 views

How to access yeast-cyc in a programmatic way to extract the GO terms?

1 vote
0 answers
36 views

Working with Smart-seq3 data, have some questions regarding UMI and bar coding

2 votes
0 answers
34 views

How to perform PCA on proteomic data set

1 vote
0 answers
34 views

Finding mutations in glycosylation sites

1 vote
0 answers
33 views

How can I develop a snakemake rule for all files in multiple directories?

0 votes
1 answer
31 views

Mapping List of Probes/Primers/Short Oligos to a Reference Fasta/q

1 vote
1 answer
30 views

Merge fragment reads

2 votes
1 answer
22 views

Is a classification tree appropriate method to use for my project?

-1 votes
0 answers
26 views

Phred score calculation

-1 votes
0 answers
26 views

Source to learn processing of Sequencing data [closed]

4 votes
1 answer
19 views

How to analyse qualitatively the penetration ability of particles in spheroids using fluorescent z-stacks?

4 votes
0 answers
24 views

Linking GenBank records to biosamples (and vice versa) using edirect

1 vote
0 answers
22 views

tensorQTL interaction issue

0 votes
0 answers
21 views

how is log2foldchange calculated in DESeq2

-1 votes
0 answers
19 views

How can I retrieve bond information from a protein PDB file?

0 votes
0 answers
18 views

Is there a method/web server to generate Position-specific scoring matrix (PSSM) for nucleotide sequences (DNA/RNA)?

2 votes
0 answers
17 views

How come bigWigSummary shows coverage greater than 1 for some region of the genome?

1 vote
0 answers
16 views

Metrics to use to estimate variant library evenness, uniformity, or bias

1 vote
0 answers
12 views

Enrichment analysis of DMPs | new Ilumina EPIC V2 900K


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