Skip to main content

Top Questions

3 votes
2 answers
70 views

Running multiple sequence using spades.py on an HPC

5 votes
2 answers
48 views

Help Understanding the Greedy Motif Search Algorithm from Textbook

3 votes
2 answers
53 views

How to blast UniProt/RefSeq database from local clusters?

2 votes
2 answers
49 views

Reasons for extremely low number of DESeq identified differentially expressed genes after RNAseq?

1 vote
1 answer
61 views

How to subset BAM file based on read length range (120-180) bp?

3 votes
2 answers
46 views

Issues with adapter trimming (Trim Galore)

3 votes
2 answers
59 views

Multi-pattern search in aligned sequences

1 vote
1 answer
46 views

Differences between Gencode GTF and Ensembl GTF files

3 votes
2 answers
44 views

Converting Gene Symbols to Entrez ID in ambiguous cases

1 vote
2 answers
34 views

Are there efficient tools for PANGENOMES visualization (GFA size >2GB)?

2 votes
2 answers
33 views

Where can I get hg38 Copy number Variation (CNV) file?

3 votes
1 answer
64 views

RNA-seq QC and alignment error in script

4 votes
1 answer
63 views

Replicating VCF Filtering & Trait-Based SNP Extraction Workflow

2 votes
1 answer
61 views

Extract gene sequences from isolates

1 vote
2 answers
47 views

Python/R/bash script to ease the comparison of different protein complexes in PDB

1 vote
1 answer
45 views

Most-abundant isoform identification using 10x scRNASeq 5' short-reads

1 vote
1 answer
33 views

Area under the curve at each time point

2 votes
2 answers
25 views

true depth per gvcf location instead of min depth per gvcf block

0 votes
1 answer
41 views

Novogene sequencing archives

1 vote
1 answer
40 views

Low confidence score from alphafold2_multimer_v3

1 vote
1 answer
39 views

Is there any standardized and ready-to-use dataset available online for download regarding protein geometry? [closed]

2 votes
1 answer
35 views

Creating a Multiple Sequence Alignment From Eggnog Mapper Results

-1 votes
1 answer
24 views

how to see pacbio reads in IGV

1 vote
0 answers
37 views

How much should the 5' adapter and i7 sequence differ?

1 vote
1 answer
28 views

Problem while mapping reads to mtDNA (SortSam)

1 vote
1 answer
32 views

Indexing the reference genome my process is killed

3 votes
1 answer
41 views

BLAST Database error: No alias or index file found for nucleotide database

3 votes
1 answer
24 views

Fixation index calculation from the vcf files

0 votes
0 answers
26 views

Cellranger count failed at detect chemistry

1 vote
0 answers
26 views

Assessing the quality of an assembly

0 votes
1 answer
25 views

getGEO not working

1 vote
1 answer
15 views

Where to obtain fastq_illumina_filter

3 votes
1 answer
24 views

How to convert bed to wig file!

2 votes
1 answer
23 views

Calculating 99th Percentile of Fst values for SNPs within gene

0 votes
0 answers
22 views

Predicting gene expression, RNA-seq, from regulatory signals, ChIP-seq

0 votes
0 answers
21 views

Is there any technique that I can use to achieve the required computation without reading all 10 million rows?

2 votes
1 answer
18 views

In snakemake, get input from output, after an expand

0 votes
0 answers
17 views

Why don't we use a multivariate (all genes) model for differential expression analysis?

1 vote
0 answers
17 views

How to know protomter position in the chromosome?

1 vote
1 answer
17 views

time*treatment series with repeated (i.e: NOT independent) sampling of replicates

1 vote
0 answers
16 views

Find most abundant transcript isoform of a gene across different tissues in long read RNA-Seq data

1 vote
0 answers
15 views

How to use cytoscape for nutrigenomics [closed]

1 vote
0 answers
15 views

Binning then assembling sequencing reads

2 votes
0 answers
13 views

How do I mount resource directories into my docker image via Cromwell / WDL?

-1 votes
0 answers
13 views

Is there anything similar to gener expressions in the case of protein chains?

1 vote
0 answers
13 views

Is there some tool so find run accessions metadata?


Looking for more? Browse the complete list of questions, or popular tags. Help us answer unanswered questions.