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1 vote
2 answers
107 views

Chromosome information for miRNA

0 votes
1 answer
31 views

Make mpileup file with several BAM files

2 votes
1 answer
20 views

need bam file for pilon

19 votes
2 answers
10k views

Obtaining uniquely mapped reads from BWA mem alignment

6 votes
4 answers
3k views

Is there a command line tool to split a SAM/BAM file by CB (cell barcode) tag?

2 votes
1 answer
44 views

Count reads at specific gene features

2 votes
1 answer
65 views

how to retain reads with low mapping quality (MAPQ) scores when using samtools view -q

1 vote
1 answer
40 views

Aligning scRNA-seq fastq to .bam without cell barcodes

2 votes
1 answer
20 views

Get number of reads with a single, (almost) exact match to the full length of a reference sequence

1 vote
2 answers
42 views

Filter bam with sambamba

4 votes
3 answers
102 views

multi-sequence alignment of samples with multiple contigs each

2 votes
1 answer
29 views

Filtering paired-end reads with sambamba: avoid discarding reads on the minus strand

1 vote
1 answer
46 views

VCF or BAM file for raw data of gene test?

0 votes
1 answer
55 views

Can I use samtools addreplacerg to replace multiple RG entries at the same time?

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