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1 vote
0 answers
9 views

Are there packages that can infer a sample's aneuploid cell proportion using sequencing data?

4 votes
1 answer
123 views

Is it common to get different number of SNVs+Indels across samples from vcf files generated using GATK and DRAGEN (counts are higher for GATK)?

0 votes
1 answer
26 views

"BLASTx for miRNA Annotation: Mature vs. Primary miRNAs as Query Sequences"

3 votes
3 answers
49 views

Best practices for handling single-end and paired-end data in a Snakemake pipeline

1 vote
1 answer
18 views

Where to obtain fastq_illumina_filter

2 votes
1 answer
21 views

GBS- 'Failure' in, Per base sequence content, Sequence Duplication Levels, and Adapter Content

3 votes
2 answers
70 views

Issues with adapter trimming (Trim Galore)

3 votes
1 answer
76 views

RNA-seq QC and alignment error in script

13 votes
8 answers
16k views

Fast way to count number of reads and number of bases in a fastq file?

1 vote
1 answer
109 views

Lower case vs. upper case nucleotids in sequence vs. dots at the end

2 votes
1 answer
78 views

Sanger sequencing annotation error

2 votes
1 answer
341 views

calculate mismatch frequency/rate from a BAM file

2 votes
1 answer
36 views

How much data to expect from metabarcoding?

1 vote
0 answers
10 views

How to extract the mutations specific to cancer after variant annotation in NGS analysis

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