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How to use compareCluster in ClusterProfiler for Multiple GSEA Comparisons in a single GSEA analysis?

b14108

13

asked Sep 3 at 21:14

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1 answer

41 views

Deseq2 model formula and longitudinal experimatal (or time-series) designs

stefanH

148

answered Aug 23 at 20:29

2 votes

1 answer

29 views

snakefile not able to find files for rule trimming

kEks

131

modified Aug 22 at 15:23

3 votes

1 answer

141 views

How do I resolve disagreements in the determination of significant genes?

CommunityBot

1

modified Aug 16 at 18:00

-1 votes

0 answers

25 views

If TPM is not comparable across cohorts, can it be used as the input for ML models if we have RNASeq data from multiple cohorts?

Ram RS

2,464

modified Aug 13 at 18:21

0 votes

0 answers

10 views

How to get Time-Course data for NOS2 & Arg1 Enzymes?

Prateek

1

asked Aug 13 at 11:56

1 vote

1 answer

268 views

length of 'dimnames' [1686] must match that of 'dims' [3]

CommunityBot

1

modified Aug 9 at 20:07

1 vote

1 answer

23 views

Trying to use GEO provided RNA-seq counts but provided Human gene annotation table is incomplete

gringer♦

14.9k

modified Aug 8 at 6:10

1 vote

1 answer

72 views

Filtering criteria for non-coding features with very low counts

CommunityBot

1

modified Jul 29 at 21:01

0 votes

1 answer

240 views

Setting Contrast for DESeq2 results

Ram RS

2,464

modified Jul 25 at 20:13

3 votes

1 answer

363 views

"perl: warning: Setting locale failed." in RepeatMasker

CommunityBot

1

modified Jul 25 at 16:06

0 votes

5 answers

184 views

Where can I find Single Cell Data with Location "Coordinates"?

stellaria

11

answered Jul 22 at 20:22

2 votes

1 answer

43 views

Salmon Multiple File SCRIPT giving error

CommunityBot

1

modified Jul 18 at 16:07

0 votes

0 answers

10 views

Should I include unannotated transcripts in a pathway enrichment analysis of a de-novo assembled transcriptome?

Ram RS

2,464

modified Jul 17 at 20:12

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How to use compareCluster in ClusterProfiler for Multiple GSEA Comparisons in a single GSEA analysis?

Deseq2 model formula and longitudinal experimatal (or time-series) designs

snakefile not able to find files for rule trimming

How do I resolve disagreements in the determination of significant genes?

If TPM is not comparable across cohorts, can it be used as the input for ML models if we have RNASeq data from multiple cohorts?

How to get Time-Course data for NOS2 & Arg1 Enzymes?

length of 'dimnames' [1686] must match that of 'dims' [3]

Trying to use GEO provided RNA-seq counts but provided Human gene annotation table is incomplete

Filtering criteria for non-coding features with very low counts

Setting Contrast for DESeq2 results

"perl: warning: Setting locale failed." in RepeatMasker

Where can I find Single Cell Data with Location "Coordinates"?

Salmon Multiple File SCRIPT giving error

Should I include unannotated transcripts in a pathway enrichment analysis of a de-novo assembled transcriptome?

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