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31 views

Dealing With Manta Limitations

Indira
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2 answers
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BAM to gene expression matrix (UMI counts per gene per cell),10X

user17144
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4 votes
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Extracting all reads from bam file which match read IDs in another file

bricoletc
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1 vote
1 answer
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Estimate insert size for single-end data with picard CollectInsertSizeMetrics

ATpoint
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1 vote
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117 views

Chromosome information for miRNA

CommunityBot
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4 votes
4 answers
155 views

Unable to open .bam file in C++ using SeqAn due to 'seqan::UnknownExtensionError'

xin king
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2 votes
1 answer
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need bam file for pilon

Giffredo
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0 votes
0 answers
60 views

Help sought with GWAS and vcf files, lack phenotype labels

gringer♦
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multi-sequence alignment of samples with multiple contigs each

BCArg
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8 votes
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515 views

How to import a large amount of .bed, .gff, .vcf, .paf, .sam files into an SQL database?

0x90
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5 votes
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2k views

How can I easily get the read size distribution of reads mapping on a certain set of regions?

Valeria Lopes
  • 1
1 vote
0 answers
33 views

In CellRanger output, what are the reads with an xf:i:17 tag?

Alexlok
  • 242
1 vote
2 answers
88 views

Filter bam with sambamba

CommunityBot
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1 vote
1 answer
144 views

VCF or BAM file for raw data of gene test?

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