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2 votes
1 answer
31 views

Dealing With Manta Limitations

5 votes
2 answers
2k views

BAM to gene expression matrix (UMI counts per gene per cell),10X

4 votes
2 answers
5k views

Extracting all reads from bam file which match read IDs in another file

1 vote
1 answer
68 views

Estimate insert size for single-end data with picard CollectInsertSizeMetrics

1 vote
2 answers
117 views

Chromosome information for miRNA

4 votes
4 answers
155 views

Unable to open .bam file in C++ using SeqAn due to 'seqan::UnknownExtensionError'

2 votes
1 answer
57 views

need bam file for pilon

0 votes
0 answers
60 views

Help sought with GWAS and vcf files, lack phenotype labels

5 votes
4 answers
306 views

multi-sequence alignment of samples with multiple contigs each

8 votes
2 answers
515 views

How to import a large amount of .bed, .gff, .vcf, .paf, .sam files into an SQL database?

5 votes
2 answers
2k views

How can I easily get the read size distribution of reads mapping on a certain set of regions?

1 vote
0 answers
33 views

In CellRanger output, what are the reads with an xf:i:17 tag?

1 vote
2 answers
88 views

Filter bam with sambamba

1 vote
1 answer
144 views

VCF or BAM file for raw data of gene test?

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