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1 answer
26 views

Looking for datasets of RNA-Seq (or scRNA-Seq) for L1 larvae C. elegans

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1 answer
89 views

What is a common number of cells per cell type in single cell RNA Seq?

1 vote
1 answer
47 views

Most-abundant isoform identification using 10x scRNASeq 5' short-reads

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1 answer
31 views

How to add ATAC data to a Seurat object using the Signac package without starting from an .h5 file?

6 votes
2 answers
189 views

Detect transcript isoform abundance for a specific gene in scRNA-seq

2 votes
0 answers
21 views

Find up/downregulated gene lists across scRNA-seq samples

2 votes
1 answer
34 views

MULTI-Seq snRNA-seq results thousands sample barcodes while there should be only 9

1 vote
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29 views

Large skip after aligning using Cellranger

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1 answer
21 views

Is it possible to integrate a bulk and a pseudobulk (previously scRNA or snRNA seq) dataset

2 votes
1 answer
78 views

After changing the idents of cells in seurat, how can I get back to original ident?

2 votes
0 answers
32 views

Memory issues in scrna_seq pseudobulk aggregation (for muscat Differential State Analysis)

2 votes
0 answers
37 views

How to import the average expression matrix for all detected genes in each cluster into Seurat?

2 votes
2 answers
44 views

How to perform meaningful Gene set erichment analysis or otherwise find broader themes/functions in different cell populations?

3 votes
2 answers
33 views

Is it ok to shortcut cluster annotation in scRNA-seq?

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