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bwa mem hangs after a few thousand reads

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padakpatek
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What are the applications of Tries(data structure) of an ordered sequence of strings in bioinformatics?

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GEP
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1 answer
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Read alignment using Bowtie2

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Estimating rate of evolution from a phylogeny

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Nitara Wijayatilake
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Sequence Alignment for sequences with the same length

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Chris_Rands
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14 votes
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How does the BWA-MEM algorithm assign its mapping qualities?

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Autodactyle
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Is my reference sequence too small?

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Problem with edit and align viral whole genomes

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tiep tran
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4 votes
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How to create a phylogenetic tree from diverse mitochondrial genomes

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Mapping List of Probes/Primers/Short Oligos to a Reference Fasta/q

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Are there different PAM matrices for different protein families? - How is the inferred common ancestor known to start with?

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3 votes
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Cannot obtain alignment summary after running Bowtie2

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Ram RS
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7 votes
1 answer
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What does it mean if aligned genomes are not of the same length?

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Find protein in DNA sequences with arbitrary encoding and possible frameshifts

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