Top new questions this week:
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I am using ggtree to draw a phylogenetic tree.
Some taxa IDs have a 0 at the beginning.
However, when I plot the tiplabel the leading zero is automatically dropped. ...
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I generated BAM files (sorted by coordinates) by aligning human RNA reads against the human reference genome using BWA MEM and ...
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Typically, a p-value of $p<=5*10^{-8}$ is used for genome-wide association testing, as there are roughly $1/p$ independent LD blocks in the human genome, so it correct for multiple testing across ...
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I am running the following Python code with python requests in my Jupiter notebook to get cancer oncology id's from EBI-EMBL.
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I am reshaping my dataframe as follows.
I want to set the Wavelength column as the column names with the code as follows.
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Greatest hits from previous weeks:
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I have a tab separated text file as shown below
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I have a single ~10GB FASTA file generated from an Oxford Nanopore Technologies' MinION run, with >1M reads of mean length ~8Kb. How can I quickly and efficiently calculate the distribution of read ...
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I would like to extract all the CDS from a batch of genomes. I have found a perl script from BioStars but this does not seem to work for me. I would preferably like to have a script/ method which will ...
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This question has also been asked on biostars
How can I reproduce this volcano plot?
I'm only able to do the traditional one, I'm kind knew too these field.
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I am working with short-read whole-genome sequences from the NCBI's SRA. I have aligned and sorted all of my short-read sequences and am attempting to index each sequence into .bai format using ...
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I apologize for this very basic question. With @Michael G.'s help, I have been learning how to use RAxML to build a phylogenetic tree (How to define an outgroup to build a robust amino acid tree) and ...
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I am using a reference genome for mm10 mouse downloaded from NCBI, and would like to understand in greater detail the difference between lowercase and uppercase letters, which make up roughly equal ...
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Can you answer this question?
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I'm interested in estimating global FST among several populations of a tetraploid plant species. I'm looking for an R package that can do this, and can preferably also produce an upper and lower bound ...
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