Top new questions this week:
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I downloaded and extract blast nt.24 database, but when I run :
blastn -task blastn-short -query consulta.fa -db nt.24 -out misalida.txt
it says: mdb_env_open: No such file or directory
and if a try ...
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I'm using cutadapt 3.5 to trim adapters and perform some filtering on paired-end data.
Both R1 and R2 sequences have 3' adapters that might be found depending on the sequence length, but R1 also has ...
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Greatest hits from previous weeks:
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I have an R package on github which uses multiple Bioconductor dependencies, 'myPackage'
If I include CRAN packages in the DESCRIPTION via Depends:, the packages ...
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Given a list of gene IDs, how do you retrieve the gene description, summary and other detailed information in R?
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I am trying to find the best way to convert VCF files to PLINK binary bed/bim/fam files, but it seems like there are many varied ways to do this. (For example, using Plink 1.9 --vcf tag, bcftools, ...
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I am working with over a million (long) reads, and aligning them to a large genome. I am considering running my alignment jobs in parallel, distributing horizontally across hundreds of nodes rather ...
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I would like to subset a VCF which only has chromosome 2.
The problem with using various grep commands, e.g.
...
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In a previous post I asked Why do NEB adapters have non-complementary sequence?
Since then, I realized that there is some other sequence in the p5 indexing primer, as well as in the p7 indexing ...
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This question is to be read in the context of data protection. It seems to be common understanding that the whole genome sequence of an individual is personally identifiable, non-anonymizable ...
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