Top new questions this week:
|
|
So I want to compare the phylogeny created using two methods for example Maximum likelihood and maximum parsimony.Is there any way to compare the two phylogeny ?
I did read about phangorn but not ...
|
|
I am using Rampage webserver to obtain a Ramachandran plot. However, the server does not reveal any plot just values (favored, allowed, outlier regions).
Can you recommend other similar web sites?
|
|
I need to rename the following headers from a FASTA file. Something like:
>ENST00000488147.1::chr1:29570-30013(-)
>ENST00000405392.5::chr2:24919186-24920186(-)
into different format like ...
|
|
I'm using BLAT to align DNA sequences between similar species, and having trouble setting the parameters to return only significant matches along the 50bp query lengths.
Using -tilesize=11 ...
|
|
I'm generating a density plot using the ggplot2 library:
ggplot(df_chr20, aes(x=start1)) + geom_density() + theme_bw()
ggplot(df_chr21, aes(x=start1)) + geom_density() + theme_bw()
The data frame ...
|
|
I manually selected all 4000 sequences on the 20 pages of the SARS-CoV-2 sequences on genbank here.
When I click on Build phylogenetic tree, it only has 200 nodes.
Is this expected? I was expecting ...
|
|
It may better to move the question here.
I am new to biology and I find my algorithm may be used in the Protein sequence alignment, since it is a henced HMM model. I find that people use HMM to ...
|
Greatest hits from previous weeks:
|
|
In a previous post I asked Why do NEB adapters have non-complementary sequence?
Since then, I realized that there is some other sequence in the p5 indexing primer, as well as in the p7 indexing ...
|
|
I would like to set the folder in which MinKNOW writes the raw data. How can I do this? I do not currently know where MinKNOW will output my data. What is the default directory where MinKNOW outputs ...
|
|
I have heard several conspiracy theories regarding the origin of the new coronavirus, 2019-nCov. For example that the virus and/or SARS were produced in a laboratory or were some variant of Middle ...
|
|
I have a reference database with contains 100s of sequences in fasta format. Some of these sequences have duplicate names like so:
>1_uniqueGeneName
atgc
>1_anotherUniqueGeneName
atgc
...
|
|
What is the difference between a Single Nucleotide Polymorphism (SNP) and a point mutation? I am quite confused in understanding these term as both of them refer to one base difference from the ...
|
|
My colleague and I have developed a software tool intend to release it open-source. This tool is specifically for tasks in bioinformatics but we think it would be helpful for the wider community. Our ...
|
|
I'm currently working with data from a Luminex multiplex assay. In this assay, the concentrations of 17 different analyte proteins were identified in 12 groups in triplicate. One of these 17 groups ...
|
