Bioinformatics

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Answer a question with score of 1 or more.
Awarded 1034 times.
PANTHER FUNCTIONAL CLASSIFICATION in R
Awarded Nov 21 at 8:41
retrieving past BLAST requests in bioPython
Awarded Nov 13 at 15:03
Filtering columns from large file based on a column list
Awarded Nov 13 at 13:34
How does the BWA-MEM algorithm assign its mapping qualities?
Awarded Nov 9 at 9:42
What is the exact definition of "breakend"?
Awarded Nov 8 at 23:55
Compare VCF files
Awarded Nov 7 at 13:56
error in downloading the annotation of sequences on NCBI
Awarded Nov 2 at 14:07
mrbayes, Sumt ; Error when setting parameter "Filename" (1)
Awarded Oct 28 at 4:43
Convert Symmetrix Matrix into Lower Triangular Matrix
Awarded Oct 27 at 20:45
How to convert BED to GFF3
Awarded Oct 25 at 18:46
LD clump GRCh38 GWAS results
Awarded Oct 20 at 20:05
Making a DNAStringSet object
Awarded Oct 17 at 15:16
How can I export a pruned phylogenetic tree in nexus format in R?
Awarded Oct 16 at 21:34
Error with eggNOG-mapper jobs
Awarded Oct 15 at 12:36
What does it mean if aligned genomes are not of the same length?
Awarded Oct 15 at 0:46
How to split a Seurat cluster in several subclusters?
Awarded Oct 10 at 14:02
Why do we delete scaffolds shorter than 500 - 1000 bp from the assembled genome?
Awarded Oct 6 at 19:21
Python scripting with ete3 to query NCBI's Taxonomy: "sqlite3 Warning (can only execute one statement at a time)"
Awarded Oct 5 at 20:50
How to convert BED to GFF3
Awarded Oct 3 at 23:50
tensorQTL interaction issue
Awarded Oct 3 at 23:50
How can I develop a snakemake rule for all files in multiple directories?
Awarded Oct 2 at 11:01
ZIP the fasterq-dump files in loop
Awarded Oct 1 at 12:56
Generating CIGAR strings for MSA with reference
Awarded Oct 1 at 2:42
How to properly annotate sequence variants and errors in a GenBank file format and how to keep track of successive versions of a GenBank file
Awarded Sep 29 at 19:55
(post deleted or otherwise unavailable)
Awarded Sep 27 at 6:06
I am trying to create a subset of 10k variants from 25-30 unmapped contigs of a g.vcf file including the header
Awarded Sep 22 at 17:33
Extracting base sequences from ABI/AB1 sanger sequencing chromatogram
Awarded Sep 15 at 20:50
Difference in Calculation through GEO2R and difference in Article
Awarded Sep 15 at 16:16
DATES: sh: 1: dates_jackknife: not found
Awarded Sep 15 at 15:34
Wrong format .ped in PLINK
Awarded Sep 13 at 16:26
maxquant error: Unhandled Exception: System.IndexOutOfRangeException: Index was outside the bounds of the array
Awarded Sep 12 at 14:21
Pairwise alignment using CIGAR String
Awarded Sep 10 at 17:48
MarkDuplicatesSpark failing with cryptic error message. MarkDuplicates succeeds
Awarded Sep 10 at 2:45
How to remove black outline from Seurat's VlnPlot violin plot
Awarded Sep 8 at 23:02
I get the following error when using the GSEA software 'Enrichment Map Visualization' tool using the Cytoscape 3.7.1 application
Awarded Sep 8 at 9:01
Problems in conducting batch effect correction
Awarded Sep 4 at 12:07
How to subset samples from a VCF file?
Awarded Sep 4 at 10:38
10X low rate of correct barcodes was observed for the candidate chemistry choices for the input
Awarded Sep 2 at 13:33
Biopython - extracting query coverage from XML Blast output
Awarded Sep 2 at 13:27
DNA, molecular descriptors
Awarded Sep 2 at 13:18
Can not launch bcftools using python's subprocess module, as it only accepts first command of commands list
Awarded Aug 27 at 21:50
Separate multiple sequence into different file, one sequence per file
Awarded Aug 26 at 8:46
Two variants associated with same chromosomal position in genotype data for one individual
Awarded Aug 21 at 9:47
Minfi and estimateCellCounts Error: in p[trainingProbes, ]: subscript out of bounds
Awarded Aug 18 at 13:42
How can I run the fdnadist command from the EMBOSS package?
Awarded Aug 16 at 13:30
How to get coefficient tables from multiple regression model result!
Awarded Aug 10 at 16:42
Using bioconductor from Python
Awarded Aug 10 at 11:46
How do I keep a glob from copying a file in Cromwell / WDL
Awarded Aug 8 at 20:51
Reference genome (bwa -mem)
Awarded Aug 7 at 8:40
Where can I find lncRNA expression data for different cell types?
Awarded Aug 3 at 21:27
How to convert Foldseek .m8 alignment files to FASTA format?
Awarded Jul 28 at 20:36
missed cleavages combinations generation
Awarded Jul 27 at 12:06
Filtering cohorts in PySpark returns Py4JJavaError
Awarded Jul 25 at 19:26
Assigning multiple GO IDs to an ID: Should I split or use the first or last ID in the hierarchy?
Awarded Jul 18 at 21:47
how to merge more than two sample in Seurat?
Awarded Jul 17 at 12:25
Understanding DESeq2 output for resultNames
Awarded Jul 15 at 13:56
selenium webdriver is stuck after downloading and saving a pdf file from pubmed central website
Awarded Jul 14 at 20:06
How can I retrieve the GRCh38 coordinates of a list of rsids?
Awarded Jul 10 at 12:06
Retrieving NCBI Taxa IDs from refseq or GenBank assembly accession
Awarded Jul 4 at 5:03
What would be the best method to obtain every prokaryotic psychrophile genome?
Awarded Jul 4 at 4:36
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