Bioinformatics

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 Student
First question with score of 1 or more.
Awarded 1660 times.
Perform protein structure-based sequence alignment in Python
Awarded yesterday
How to interpret the Copy Number from pseudocount depmap portal file?
Awarded yesterday
Filtering paired-end reads with sambamba: avoid discarding reads on the minus strand
Awarded yesterday
Extracting base sequences from ABI/AB1 sanger sequencing chromatogram
Awarded yesterday
postgreSQL error: "ERROR: invalid input syntax for type numeric: NULL" [closed]
Awarded Jun 22 at 10:36
Making PLINK compatible files from VCF file without phenotype information
Awarded Jun 22 at 8:51
Construct phylogeny from a Fasta file
Awarded Jun 21 at 15:42
Create heat map that groups genes by expression within cluster in Seurat
Awarded Jun 21 at 10:35
Question about enrichment score (ES) and NES from GSEA
Awarded Jun 21 at 10:06
BWA-mem and sambamba read group line error
Awarded Jun 21 at 1:10
the following errors are found during the installation of an open source software, UNCeqR on z shell
Awarded Jun 19 at 6:26
Can I Incorporate svaseq() into GSEA/GSVA analysis?
Awarded Jun 18 at 8:06
How to align integer (non-DNA/protein) sequences?
Awarded Jun 18 at 7:32
How does split reads look like in sam files?
Awarded Jun 16 at 22:40
Different results of spearman correlation between TPM and FPKM
Awarded Jun 16 at 22:40
Elegant Way to Extract Gene Symbols from FASTA Headers
Awarded Jun 16 at 1:42
VCF or BAM file for raw data of gene test?
Awarded Jun 16 at 1:37
DeconRNASeq: Extract gene names from returned mixing proportions
Awarded Jun 15 at 17:07
Running hubCheck utility from inside K8s's Pod
Awarded Jun 14 at 12:41
run NamD on Mac [closed]
Awarded Jun 13 at 16:10
Wrong format .ped in PLINK
Awarded Jun 10 at 15:12
Issue with iCTNet2 installation
Awarded Jun 10 at 4:56
Identification of unique chains in proteins by sequence similarity
Awarded Jun 9 at 3:31
How can I download from NCBI all the ITS genes and the related taxonomy?
Awarded Jun 8 at 16:27
beginner RNA-seq Replicate papers
Awarded Jun 8 at 9:56
Compare my VCF to gnomAD variants
Awarded Jun 7 at 21:20
Problem with setting fixed topology for MrBayes
Awarded Jun 7 at 16:04
How to rescale a function?
Awarded Jun 7 at 3:08
Error in eval(substitute(select), nl, parent.frame()) : object 'Length' not found
Awarded Jun 7 at 3:08
Does the number of RNA reads per cell obtained from the 10X scRNA experiment depend on amount of mRNA in given cell?
Awarded Jun 7 at 3:08
Find species from FASTA files
Awarded Jun 7 at 3:08
.cif .pdb conversion with python
Awarded Jun 7 at 3:08
amino acids substitution probability [closed]
Awarded Jun 7 at 3:08
What is the full script to extract sequences from fasta file by using Ids in text file in python 3 and pycharm?
Awarded Jun 7 at 3:08
Is there a single cell RNAseq equivalent of GTEx or TCGA? [closed]
Awarded Jun 7 at 3:08
Is it possible to cluster a sc-RNAseq expression matrix with weighting or embedding?
Awarded Jun 6 at 17:47
Filter bam with sambamba
Awarded Jun 6 at 15:05
Where to find database for breast cancer phenotype?
Awarded Jun 6 at 4:57
Multiple sequence alignment with gaps
Awarded Jun 5 at 5:22
How to get coding sequences (CDS) of UniProt reference proteomes?
Awarded Jun 5 at 5:22
Installation of Biovia DS visualiser on ubuntu
Awarded Jun 3 at 5:12
somatic SNV tool for ONT samples
Awarded Jun 1 at 12:41
Calculating the effect of differences between two groups of nucleotide sequences at every position
Awarded May 31 at 19:26
How to extract residues from specific chain of interest from multiple pdb files?
Awarded May 30 at 4:22
Select synonymous sites from a multiple sequence alignment
Awarded May 30 at 4:22
Arlequin files not able to converge beyond 2000 steps for some .arp files
Awarded May 30 at 4:22
Weird data in VCF file
Awarded May 30 at 4:17
Understanding protein-peptide docking analysis
Awarded May 29 at 23:55
(post deleted or otherwise unavailable)
Awarded May 26 at 3:07
How do I intrepret the generated motifs of a dataset of 5-methylcytosine (5mC) sequences?
Awarded May 24 at 3:56
Is there an R package to calculate global FST, with confidence intervals, for tetraploid populations
Awarded May 22 at 2:50
How to extract reads that map exclusively to a single site with 1 or zero mismatches from BAM files
Awarded May 20 at 15:06
Krakenuniq mmap error
Awarded May 19 at 7:18
What is the best way to perform batch ajustment between two experiments?
Awarded May 14 at 16:42
Cromwell - controlling core/mem usage, and CallCaching, while running locally?
Awarded May 7 at 13:48
Cytoscape for coloring the nodes in the network
Awarded May 6 at 1:16
ATAC peak anatations
Awarded May 3 at 17:42
How to manage memory contraints when analyzing a large number of gene count matrices? I keep running out of RAM with my current pipeline
Awarded May 3 at 14:50
Phylogenetic tree rooting in shotgun metagenomics
Awarded May 2 at 1:19
How do I rename output folder created using WDL's glob function, with cromwell execution engine?
Awarded Apr 28 at 13:08
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