Bioinformatics Beta

Student

 Student
First question with score of 1 or more.
Awarded 1373 times.
How to decide whether to assume 2 Gene Losses or 1 to find minimum cost trees for Gene Duplication/Expression events?
Awarded 16 hours ago
Why ace2 is not included in SARS-COV-2 PPIN map?
Awarded 2 days ago
RNA_Seq Analysis in R, propmapped function issue
Awarded 2 days ago
Seurat - subsetting by genes expressed
Awarded 2 days ago
Sending chimera MD to remote computer
Awarded 2 days ago
10X single cell sequencing issue
Awarded 2 days ago
PCA plot in R coloured by sample type
Awarded Jun 13 at 10:16
How to deal with wildcards (N) in sequence logos
Awarded Jun 12 at 23:27
querying metadata (GDC Data Portal) in python3
Awarded Jun 11 at 12:33
How to create a DESeqDataSet and define experiment design before varianceStabilizingTransformation?
Awarded Jun 10 at 16:06
Find selective markers for one cluster automatically
Awarded Jun 10 at 1:56
How do I remove allele annotations from SNP Ids in .bim file?
Awarded Jun 10 at 1:49
Positive marker and negative marker in scRNA-seq datasets
Awarded Jun 10 at 1:42
Network analysis: confidence score (STRING database) validation
Awarded Jun 8 at 13:26
How to extract subset of protein structure (PDB format) file based on a subsequence of that protein
Awarded Jun 7 at 0:56
Is there an efficient way to extract CIGAR strings for read pairs from bam files with python?
Awarded Jun 5 at 21:32
Finding smaller sequences from within larger sequences
Awarded Jun 4 at 15:36
How to graph sequence ranges, for example intron sequences or conserved domains
Awarded Jun 4 at 11:48
Label and labelbox mismatched in Pymol after ray
Awarded Jun 4 at 11:05
MUMmer plot error. Line 884. What to do?
Awarded Jun 3 at 12:27
What is the file .mums created by mummer?
Awarded Jun 3 at 10:57
Automatize classical debugging in a bash script? (normal debugging by hand)
Awarded Jun 3 at 9:51
using Bowtie to map miRNA-seq data to rfam and also reference genome
Awarded May 31 at 8:56
Entrez (Biopython) esearch and efetch not returning sequence as expected
Awarded May 31 at 8:56
How do you convert Raw Alignment Score to Bit Score?
Awarded May 30 at 5:27
Masking sites in a vcf file
Awarded May 30 at 1:55
where to find sample contig data
Awarded May 29 at 10:40
Important genes beyond PAM50 for breast cancer classification
Awarded May 29 at 10:36
Long-form gene summary
Awarded May 27 at 12:15
PubMed Central Open Access archives are corrupted
Awarded May 27 at 12:03
Solutions to reference bias issue
Awarded May 24 at 23:10
Retain only part of a file name and fasta header in fasta directory
Awarded May 24 at 14:51
How does FDRtool work?
Awarded May 24 at 9:09
Construct the Overlap Graph of a Collection of k-mers
Awarded May 24 at 6:25
Ccle miRna data units
Awarded May 24 at 6:16
Python package or CLI tool outputting mutations of sequence with respect to reference
Awarded May 24 at 6:16
Is SBOL-VOWS operational?
Awarded May 22 at 4:16
What is the right way of calculating a Phred score by hand?
Awarded May 20 at 12:21
How can I create a combined barplot like this image?
Awarded May 20 at 7:27
Combining dataTracks in Gviz by averaging or subtraction
Awarded May 19 at 7:33
Bruker MALDI-TOF bacteria species identification scoring algorithm
Awarded May 19 at 7:33
How can I extract sequences from FASTA file using OTUs ID?
Awarded May 18 at 10:25
How to estimate the phenotypic variation explained by top SNPs from a GWAS study?
Awarded May 17 at 4:34
Master of Pores Installation Mac OS Mojave 10.14
Awarded May 17 at 4:27
How do you currently track bugs in python using freely available software/websites?
Awarded May 17 at 4:27
Nucleotide Frequency - HOMER?
Awarded May 15 at 7:35
fastq file format unknown
Awarded May 14 at 9:35
Get Salmon mapping/alignment summary
Awarded May 13 at 3:17
How do I install hammock?
Awarded May 12 at 23:51
How to compare Log2 Fold Change values
Awarded May 12 at 1:21
Can I eject the flow cell MinION from USB port when doing basecalling?
Awarded May 9 at 7:10
How can I associate centrality score of genes(vertices) in a GRN with the probabilistic model in terms of cause and effect?
Awarded May 9 at 5:18
Is it possible to correct bond order and conectivity problems in an sdf file according to mol2 files?
Awarded May 9 at 5:18
10bp sliding window quality score
Awarded May 9 at 5:18
Imputation of dog genotype
Awarded May 9 at 5:06
How to convert txt.gz into fastq.gz?
Awarded May 9 at 5:06
How to calculate average minor allele frequency (MAF) difference between two populations (i.e. European, Hispanic)
Awarded May 7 at 9:55
How to import data from cell ranger to R (Seurat)?
Awarded May 7 at 9:55
How can I speed up FASTA ssearch output?
Awarded May 7 at 8:45
Getting exact mismatch data from multiple sequence alignment
Awarded May 7 at 6:33
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