Bioinformatics

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 Student
First question with score of 1 or more.
Awarded 1528 times.
How are exons, introns and signal peptides determined in a DNA sequence?
Awarded 3 hours ago
How fo force nextflow to repeat a process until all values in a particular channels are used up BUT a single value from another channel is needed
Awarded yesterday
How to consume non-CRAN packages in custom package?
Awarded Jan 23 at 13:04
PSSM Matrix in PSI-BLAST
Awarded Jan 22 at 23:33
Find the genomic locations of exons of certain human gene
Awarded Jan 22 at 13:26
About the log2 fold change
Awarded Jan 21 at 14:57
(post deleted or otherwise unavailable)
Awarded Jan 20 at 17:37
How do I set my path for the SRA toolkit under macOS 12.1?
Awarded Jan 20 at 0:27
#1 Parsing trouble java.lang.NumberFormatException in GSEA 4.2.1
Awarded Jan 19 at 21:46
PDBQT file format
Awarded Jan 18 at 10:33
imputed dosage values for vcf files
Awarded Jan 16 at 12:02
Mounting a folder from the host to a Docker, while running it as Cromwell runtime
Awarded Jan 15 at 13:03
Is there any function in Biopython to convert a DNA sequence from ambiguous to unambiguous?
Awarded Jan 10 at 18:17
Python script to simultaneously generate multiple pdbqt files for AutoDockTools?
Awarded Jan 10 at 17:55
How to split a Seurat cluster in several subclusters?
Awarded Jan 9 at 20:25
'GCLOUD_SDK_PATH' Error
Awarded Jan 9 at 14:12
Independent Subset of Rectangles Problem for Nonoverlapping local alignments
Awarded Jan 7 at 15:48
Pymol python script for selecting a residue's sidechain and calculating its center of mass
Awarded Jan 7 at 15:01
How to make CIRCOS plot of VCF file?
Awarded Jan 2 at 6:33
How to make MSA for contact prediction?
Awarded Jan 2 at 5:40
Help with MinION sequencing data species identification
Awarded Dec 30 '21 at 0:10
makeblastdb creating multiple files of unexpectedly large sizes
Awarded Dec 29 '21 at 10:21
MarkDuplicatesSpark failing with cryptic error message. MarkDuplicates succeeds
Awarded Dec 22 '21 at 1:06
What are Dummy fastqs?
Awarded Dec 21 '21 at 21:16
What is meant by "mean ratio" with regards to a gene deletion in the DECIPHER genomics database?
Awarded Dec 20 '21 at 14:25
Visualization of mutations in (part of) viral genome - existing tools?
Awarded Dec 17 '21 at 17:48
Converting Control and Case vcf files into a format that can be processed by plink 1.9.0
Awarded Dec 14 '21 at 19:11
Chou-Fasman Method Overlapping Regions Problem - Secondary Structure Prediction
Awarded Dec 10 '21 at 11:55
How to chose values for QC for a GWAS?
Awarded Dec 5 '21 at 20:33
bowtie No alignments
Awarded Dec 1 '21 at 18:40
replacing periods with hyphen
Awarded Nov 26 '21 at 18:07
How to split genotypes into two groups from a SNP txt file contains -1, 0 and 1 in R?
Awarded Nov 26 '21 at 1:27
How should I downsample and normalize R1s and R2s and incorporate this into Lexogen's QSPA tool
Awarded Nov 26 '21 at 1:27
Print first colum is the condition is true using awk
Awarded Nov 20 '21 at 11:42
FindMarkers from Seurat returns p values as 0 for highly significant genes
Awarded Nov 18 '21 at 18:32
What exactly is a reasonable evolutionary criterion? [closed]
Awarded Nov 17 '21 at 20:45
Does anyone know what tools are used to construct this beautiful genome map?
Awarded Nov 15 '21 at 11:51
SyntaxError after end of Snakefile code?
Awarded Nov 12 '21 at 17:56
Simulation of DNA sequences through substitution rates
Awarded Nov 10 '21 at 11:17
Best R program to use for RNA seq analysis
Awarded Nov 8 '21 at 12:27
Understanding exercise on file coverage with question on summary statistics
Awarded Nov 7 '21 at 17:50
Using a phased reference assembly to phase sample genotypes
Awarded Nov 7 '21 at 2:55
Retrieving all genes for a gene ontology term
Awarded Nov 5 '21 at 16:48
Getting translation table of organisms through Entrez direct (or other CLIs)
Awarded Nov 5 '21 at 16:05
Counting hexamers in fasta sequence and identify its structure (and interruptions)
Awarded Nov 2 '21 at 17:15
Generating PDB file for custom DNA sequence
Awarded Oct 29 '21 at 16:55
What statistics can I use on qPCR data composed of several runs if all normality tests fail on the dataset?
Awarded Oct 28 '21 at 13:42
Metagene analysis with deepTools; 5UTR-CDS-3UTR and Exon-Intron-Exon
Awarded Oct 26 '21 at 22:27
fastqCleaner failing to launch in RStudio
Awarded Oct 26 '21 at 22:16
Downloading exon-wise gene sequence using commandline
Awarded Oct 26 '21 at 22:11
In Seurat, how can I export cluster IDs to csv files
Awarded Oct 26 '21 at 22:06
Do I have to download all nt.xx files to perform a search in blastn 2.12.0
Awarded Oct 24 '21 at 0:41
Is it possible to do DEG analysis without replicates?
Awarded Oct 17 '21 at 12:17
Tool that can sort NCBI taxonomy ids based on phylogeny
Awarded Oct 16 '21 at 13:57
Difference between bioinformatics and cheminformatics [closed]
Awarded Oct 15 '21 at 9:36
What is the 4th "level" of version number for the S. cerevisiae reference genome?
Awarded Oct 13 '21 at 13:34
Understanding the different designs in DESeq2
Awarded Oct 13 '21 at 11:21
I can't launch FastqCleaner I always get a warning message and the application never starts
Awarded Oct 12 '21 at 20:57
NMF - Subscript out of bounds
Awarded Oct 12 '21 at 20:57
How to convert the chromosome position for insertions/deletions to rsIDs in a GWAS summary statistics?
Awarded Oct 12 '21 at 20:57
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