Bioinformatics

Nice Answer

 Nice Answer
Answer score of 10 or more. This badge can be awarded multiple times.
Awarded 149 times.
How can we find the distance between all residues in a PDB file?
Awarded Sep 21 at 18:03
How to subset a VCF by chromosome and keep the header?
Awarded Sep 3 at 5:49
Why Bioconductor?
Awarded Jun 14 at 8:42
Running SnakeMake on cluster
Awarded Jun 8 at 9:40
When to account for the blacklisted genomic regions in ChIP-seq data analyses?
Awarded May 22 at 11:32
How do I rename fasta headers?
Awarded Apr 22 at 13:57
Good / recommended way to archive fastq and bam files?
Awarded Apr 13 at 21:27
What is indel calling and what is its purpose?
Awarded Apr 9 at 5:31
How to download FASTA sequences from NCBI using the terminal?
Awarded Nov 15, 2022 at 1:10
R package development: How does one automatically install Bioconductor packages upon package installation?
Awarded Sep 21, 2022 at 15:32
Understanding DESeq2 design, contrast and results
Awarded Aug 10, 2022 at 11:45
How to count the number of mapped read in 100-bp window from a BAM/SAM file
Awarded Aug 8, 2022 at 10:02
How to count reads in bam per bed interval with bedtools
Awarded Aug 2, 2022 at 10:47
Why does a very strong BLAST hit get lost when I change num_alignments, num_descriptions or max_target_seqs parameter?
Awarded Jul 20, 2022 at 18:32
Bootstrap analysis - why it is called bootstrap?
Awarded Jul 8, 2022 at 14:55
How to extract metadata from NCBI's short read archive (SRA) for a few runs?
Awarded May 19, 2022 at 10:37
Why does the SARS-Cov2 genome has letter t
Awarded Feb 23, 2022 at 21:27
Removing duplicate FASTA sequences based on headers with Bash
Awarded Jan 13, 2022 at 9:32
Tools for simulating Oxford Nanopore reads
Awarded Nov 15, 2021 at 15:06
Index a BAM file using pysam
Awarded Nov 2, 2021 at 18:17
Converting Gene Symbol to Ensembl ID in R
Awarded Sep 28, 2021 at 8:21
Why do SAM and BAM use different coordinate systems?
Awarded Sep 24, 2021 at 10:15
Least present k-mers in the human genome
Awarded Aug 14, 2021 at 18:56
How to subset samples from a VCF file?
Awarded Aug 2, 2021 at 10:42
How to version the code and the data during the analysis?
Awarded Jun 30, 2021 at 16:08
Are variant calling files personally identifiable information?
Awarded Jun 30, 2021 at 15:55
BLAST(n): No hits found
Awarded Apr 27, 2021 at 21:20
Difference between CPM and TPM and which one for downstream analysis?
Awarded Mar 10, 2021 at 18:25
How to concatenate "by chromosome"-VCFs?
Awarded Mar 4, 2021 at 16:50
Changing the record id in a FASTA file using BioPython
Awarded Feb 24, 2021 at 22:06
What methods are available to find a cutoff value for non-expressed genes in RNA-seq?
Awarded Jan 25, 2021 at 14:16
How to detect a mutation and predict its consequence?
Awarded Jan 5, 2021 at 15:05
What is deep sequencing?
Awarded Dec 3, 2020 at 8:35
How to convert fasta file to tab delimited file
Awarded Nov 23, 2020 at 16:17
Obtaining uniquely mapped reads from BWA mem alignment
Awarded Sep 20, 2020 at 16:05
Convert R RNA-seq data object to a Python object
Awarded Sep 4, 2020 at 23:31
Random access on a FASTQ file
Awarded Aug 20, 2020 at 21:10
plotting two heatmaps with the same order of genes
Awarded Apr 28, 2020 at 16:35
Why do some assemblers require an odd-length kmer for the construction of de Bruijn graphs?
Awarded Apr 26, 2020 at 11:10
How to convert FASTA to BED
Awarded Apr 23, 2020 at 20:37
Uppercase vs lowercase letters in reference genome
Awarded Apr 23, 2020 at 20:37
Single-sample vs. joint genotyping
Awarded Apr 6, 2020 at 15:35
How do PCR duplicates arise and why is it important to remove them for NGS analysis?
Awarded Mar 26, 2020 at 8:30
Since every human has a different DNA (different combinations of C, G, A, T) what does it mean to have the genome done?
Awarded Mar 25, 2020 at 21:20
A new paper suggests the Corona Virus has "Uncanny similarity of unique inserts in the 2019-nCoV spike protein to HIV-1" - What does this mean?
Awarded Feb 27, 2020 at 20:10
Why does the FASTA sequence for coronavirus look like DNA, not RNA?
Awarded Feb 10, 2020 at 12:25
R package development: How does one automatically install Bioconductor packages upon package installation?
Awarded Feb 9, 2020 at 11:40
Can open-source software be peer-reviewed and published?
Awarded Feb 8, 2020 at 19:45
Can open-source software be peer-reviewed and published?
Awarded Feb 6, 2020 at 17:25
Is it possible for coronavirus or SARS to be synthetic?
Awarded Feb 5, 2020 at 15:05
Why does the SARS-Cov2 coronavirus genome end in aaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa (33 a's)?
Awarded Jan 31, 2020 at 20:10
Why does the SARS-Cov2 coronavirus genome end in aaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa (33 a's)?
Awarded Jan 31, 2020 at 20:10
Why does the SARS-Cov2 coronavirus genome end in aaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa (33 a's)?
Awarded Jan 27, 2020 at 14:25
Why does the SARS-Cov2 coronavirus genome end in aaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa (33 a's)?
Awarded Jan 25, 2020 at 15:10
Which quality score encoding does PacBio use?
Awarded Jan 13, 2020 at 20:15
What is a quick way to find the reverse complement in bash
Awarded Jan 9, 2020 at 9:30
What's the best way to download data from the SRA? Is it really this slow?
Awarded Jan 7, 2020 at 22:00
What is 'k' in sequencing?
Awarded Dec 30, 2019 at 21:10
Better aligner than bowtie2?
Awarded Dec 17, 2019 at 19:35
BAM to BigWig without intermediary BedGraph
Awarded Dec 10, 2019 at 16:25
1
2 3

Your privacy

By clicking “Accept all cookies”, you agree Stack Exchange can store cookies on your device and disclose information in accordance with our Cookie Policy.