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Convert Entrez gene ids and HUGO symbols, whose genome assembly is unknown, to GRCh38 Ensembl gene ids

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user345394

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How to retrieve the subcellular location info from uniprot?

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Jun

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Why does GATK produce both 0/1 and 1/0 genotypes in the same file? Are the two not equivalent?

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terdon♦

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Can I change the name of file features.tsv to genes.tsv

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hua

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Mapping UniProt id to Entrez id

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user224050

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I have 23andme text files and would like to convert to SAM/BAM format

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Owance Jackie

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How do I filter a GFF file by gene type?

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stack_learner

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Autodetect max number of cores and pass as an argument in Nextflow

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TW93

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How to remove the unpaired reads in sam/bam files?

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Wang Ming

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Is there a straightforward way to get mismatches/indels in a BAM file using pysam?

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juniper-

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How much does Nanopore cDNA Sequencing Cost?

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gringer♦

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Fix dash/empty ALT alleles for deletions in VCF

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Nils

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Best methods for clustering heatmap based on regions where the genes are most highly expressed?

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ceno980

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What are negative FSC-A values in flow cytometry data?

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WYSIWYG

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Remove gaps from alignment?

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mk894

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Charles

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.cif .pdb conversion with python

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Balint Biro

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What is the ICGC normalized_read_count?

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Gregor Sturm

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Loading local FASTA file in igv.js

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KirkD-CO

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Use of "baseMean" in DeSEQ2

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CodeMonke

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Why do I get so many insertions from Minimap2 on my Nanopore WGS?

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SmallChess

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How to run HYPHY on multiple files non-interactively?

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Iakov Davydov

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Concatenate multiple fasta files into one file for MLST

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Saruul B

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How to manage memory contraints when analyzing a large number of gene count matrices? I keep running out of RAM with my current pipeline

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Parsing gtf file for transcript ID and transcript name

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kcm

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epsilone

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How to show only my read on IGV?

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SmallChess

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Comparing phylogeny in R

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kcm

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Importance of Proper Pairs vs Aligned Reads for RNASeq data

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Tomas Bencomo

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How to see effect of point mutation in PyMOL?

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User52

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Does the ".full.aln" file produced by snippy-core contain all bases of my input sequences aligned to the reference genome?

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Fabien

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In calculating the retention index, why do we use the character state with the lowest frequency?

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Namenlos

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How are Principal Component analyses and Admixture analyses from a genetic alignment different?

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Erin Thompson

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data storage requirements for RNA-seq and WGS

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kraken2 to OTU table creation

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twinkle

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In a RNA-Seq heatmap should you do Z-score standardisation before clustering the rows/columns or after?

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ceno980

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Extracting p-values using corrr package in R

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rahul

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Why can't AlphaFold predict the consequences of point-mutations?

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Paul

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terdon♦

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How to write FASTA records using "Bio.SeqIO.write()"

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R ggtree apply colors to branches with multiple colors

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Hypergeometic test for the overlap of two set of genomic intervals (e.g. from Chip-seq data)

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Cornelius Roemer

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How to find adapter sequence

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user432797

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Strategy for merging many VCFs

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Michael Hall

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How to remove black outline from Seurat's VlnPlot violin plot

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Charles

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Converting aligned fasta to plink ped/bed

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Empiromancer

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Is there a JSON-based genomic feature format?

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juniper-

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NO_COOR reads not in a single block at the end 0 -1

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Biomagician

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Are phylogenetic tree construction algorithms any different than general clustering algorithms?

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Missing data mappings in mygene.info while trying to convert Genes Ensembl Ids to Entrez Ids

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floatingpurr

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Primer-Blast Custom Database [error]

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