Bioinformatics

Famous Question

 Famous Question
Question with 10,000 views. This badge can be awarded multiple times.
Awarded 33 times.
Changing active.ident in Seurat
Awarded Feb 14 at 3:16
Converting Ensembl Gene IDs to Entrez Gene IDs through biomart
Awarded Feb 11 at 9:18
Converting a BAM file into VCF
Awarded Jan 18 at 20:40
how to merge more than two sample in Seurat?
Awarded Jan 12 at 22:56
Downloading a reference Genome for Bowtie2
Awarded Nov 23, 2022 at 6:55
How to use Python to count k-mers?
Awarded Sep 29, 2022 at 22:34
Meaning of BWA-MEM MAPQ scores
Awarded Sep 22, 2022 at 9:21
Download multiple SRA files
Awarded Sep 8, 2022 at 3:57
Error in as.vector(x) : no method for coercing this S4 class to a vector
Awarded Aug 29, 2022 at 4:52
Obtaining uniquely mapped reads from BWA mem alignment
Awarded Aug 17, 2022 at 23:01
How to merge .fastq.qz files into a single .fastq.gz with their same id without losing any content in parallel
Awarded Jul 15, 2022 at 15:36
How to subset a VCF by chromosome and keep the header?
Awarded Jul 1, 2022 at 8:19
Manually define clusters in Seurat and determine marker genes
Awarded May 12, 2022 at 6:27
How to calculate p-values for fold changes?
Awarded May 5, 2022 at 14:18
What Ensembl genome version should I use for alignments? (e.g. toplevel.fa vs. primary_assembly.fa)
Awarded Mar 11, 2022 at 19:30
How to download FASTA sequences from NCBI using the terminal?
Awarded Feb 22, 2022 at 16:12
How to convert FASTA to BED
Awarded Feb 21, 2022 at 14:32
Feature annotation: RefSeq vs Ensembl vs Gencode, what's the difference?
Awarded Feb 15, 2022 at 7:50
How to obtain .bed file with coordinates of all genes
Awarded Jan 21, 2022 at 19:10
How can I downsample a BAM file while keeping both reads in pairs?
Awarded Nov 17, 2021 at 0:50
Resolution parameter in Seurat's FindClusters function for larger cell numbers
Awarded Nov 5, 2021 at 20:16
Fast way to count number of reads and number of bases in a fastq file?
Awarded Jun 16, 2021 at 16:55
Converting VCF file to PLINK bed/bim/fam files
Awarded Apr 7, 2021 at 12:40
How to subset samples from a VCF file?
Awarded Feb 19, 2021 at 13:02
Uppercase vs lowercase letters in reference genome
Awarded Jan 29, 2021 at 14:04
Remove/delete sequences by ID from multifasta
Awarded Jan 21, 2021 at 16:05
changing color key range to specified range in heatmap.2 function
Awarded Dec 15, 2020 at 1:22
What is the difference between a transcriptome and a genome? [closed]
Awarded Oct 23, 2020 at 19:36
Converting Gene Symbol to Ensembl ID in R
Awarded Jul 3, 2020 at 4:04
Difference between CPM and TPM and which one for downstream analysis?
Awarded Apr 19, 2020 at 19:47
How to scale the size of heat map and row names font size?
Awarded Feb 13, 2020 at 4:00
Why does the SARS-Cov2 coronavirus genome end in aaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa (33 a's)?
Awarded Jan 26, 2020 at 2:55
What is the difference between FASTA, FASTQ, and SAM file formats?
Awarded Nov 13, 2018 at 1:40

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