Bioinformatics

Editor

 Editor
First edit.
Awarded 1128 times.
Filtering paired-end reads with sambamba: avoid discarding reads on the minus strand
Awarded yesterday
Construct phylogeny from a Fasta file
Awarded Jun 21 at 14:40
BWA-mem and sambamba read group line error
Awarded Jun 20 at 18:42
How does split reads look like in sam files?
Awarded Jun 19 at 5:42
beginner RNA-seq Replicate papers
Awarded Jun 18 at 4:02
How to align integer (non-DNA/protein) sequences?
Awarded Jun 17 at 17:01
Can I Incorporate svaseq() into GSEA/GSVA analysis?
Awarded Jun 16 at 16:34
(post deleted or otherwise unavailable)
Awarded Jun 15 at 21:56
Elegant Way to Extract Gene Symbols from FASTA Headers
Awarded Jun 15 at 15:56
How to create an Alchem configuration file for NamD simulation?
Awarded Jun 15 at 4:32
Heatmap of motifs present in protein sequences
Awarded Jun 14 at 16:11
Visualize network (graph) using "line" layout
Awarded Jun 11 at 13:06
Is it possible to cluster a sc-RNAseq expression matrix with weighting or embedding?
Awarded Jun 10 at 6:48
Filter bam with sambamba
Awarded Jun 6 at 16:16
(post deleted or otherwise unavailable)
Awarded Jun 6 at 7:56
Where to find database for breast cancer phenotype?
Awarded Jun 4 at 13:02
Where to find database for breast cancer phenotype?
Awarded Jun 4 at 6:20
Calculating the effect of differences between two groups of nucleotide sequences at every position
Awarded May 31 at 9:33
Weird data in VCF file
Awarded May 29 at 1:47
(post deleted or otherwise unavailable)
Awarded May 27 at 4:15
Perform protein structure-based sequence alignment in Python
Awarded May 24 at 9:05
BAM files with no RNAME and POS, how to map contents to SNPs?
Awarded May 22 at 19:04
set -euo pipefail in Snakemake wrapper
Awarded May 21 at 7:36
How can I get the duration of the events in Nanopore?
Awarded May 18 at 13:49
VCF or BAM file for raw data of gene test?
Awarded May 16 at 16:15
Cytoscape for coloring the nodes in the network
Awarded May 6 at 6:31
Does the number of RNA reads per cell obtained from the 10X scRNA experiment depend on amount of mRNA in given cell?
Awarded May 5 at 8:27
(post deleted or otherwise unavailable)
Awarded May 5 at 4:04
ATAC peak anatations
Awarded May 3 at 2:51
Phylogenetic tree rooting in shotgun metagenomics
Awarded May 2 at 8:25
Krakenuniq mmap error
Awarded May 1 at 7:30
Select synonymous sites from a multiple sequence alignment
Awarded Apr 27 at 17:42
Error in DESeq2 analysis with dimnames
Awarded Apr 26 at 21:56
Protein-Ligand in PDB
Awarded Apr 24 at 17:33
Missing value imputation method for gene expression data
Awarded Apr 22 at 1:55
How can I call one file from a channel that's composed of several files in Nextflow?
Awarded Apr 19 at 2:41
Parsing pre-2007 SMILES string
Awarded Apr 19 at 2:07
LD Score Regression Derivation hard to follow
Awarded Apr 14 at 10:15
(post deleted or otherwise unavailable)
Awarded Apr 12 at 21:41
Sequence alignment with MUSCLE
Awarded Apr 11 at 5:40
(post deleted or otherwise unavailable)
Awarded Mar 27 at 13:15
How do I use bash for loops to loop through a WDL Array?
Awarded Mar 23 at 11:01
Mapping to assemblies in subdirectories
Awarded Mar 22 at 9:47
Workflow for identification of new splicing variants from RNA-seq data?
Awarded Mar 21 at 16:41
Trinity de novo assembly not completing
Awarded Mar 20 at 0:48
How to properly annotate sequence variants and errors in a GenBank file format and how to keep track of successive versions of a GenBank file
Awarded Mar 17 at 13:33
Convert Arlequin ("DNA" markers) to Genepop (PGDspider or otherwise)
Awarded Mar 15 at 14:40
BPGA error: there was no protein data in file
Awarded Mar 14 at 2:32
What is the meaning of "Filtering allele frequency" in the gnomAD database?
Awarded Mar 10 at 22:27
How to calculate switch errors on plink formatted phased genotype data?
Awarded Mar 8 at 18:21
How to use GEO_SPHERE?
Awarded Mar 7 at 20:02
(post deleted or otherwise unavailable)
Awarded Mar 7 at 14:55
Why does this modification site file contain duplicate sites and multiple related proteins?
Awarded Mar 4 at 16:16
Why is bulk RNA sequencing reflecting AVERAGE expression but not TOTAL expression of all cells?
Awarded Feb 26 at 9:27
How to convert fasta file to tab delimited file
Awarded Feb 25 at 20:43
Index VCF file for rapid access by rsID?
Awarded Feb 22 at 22:26
Methods to work directly with bigbed file?
Awarded Feb 21 at 9:32
Methods to work directly with bigbed file?
Awarded Feb 20 at 20:42
Compare mapped reads from BWA -MEM and STAR from .bam files
Awarded Feb 20 at 3:16
Querying The Cancer Genome Atlas (TCGA) for gene expression
Awarded Feb 18 at 16:27
1
2 3 4 5
…
19

Your privacy

By clicking “Accept all cookies”, you agree Stack Exchange can store cookies on your device and disclose information in accordance with our Cookie Policy.