Bioinformatics Beta

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First edit.
Awarded 1021 times.
How to copy only certain counts for genes in tsv file to new file in linux
Awarded 15 hours ago
Demovir produces an empty output
Awarded Sep 22 at 3:10
Generating sequence from HMM [duplicate]
Awarded Sep 19 at 15:11
snakemake multiple parameters for multiple input and single output in snakemake. ConbineGVCFs gatk problem
Awarded Sep 16 at 14:19
Negative binomial modeling of RNA-Seq data
Awarded Sep 15 at 14:36
Remove/delete sequences by ID from multifasta
Awarded Sep 15 at 5:42
Help to understand the code for dipeptide composition calculation (in python)
Awarded Sep 11 at 14:15
(post deleted or otherwise unavailable)
Awarded Sep 10 at 17:10
How do I load a GEO dataset into Seurat?
Awarded Sep 10 at 16:57
Why are my Nextflow processes not executing in parallel?
Awarded Sep 4 at 19:26
Translate all reads in a .fastq into protein sequence from deep mutational scanning experiment
Awarded Sep 1 at 16:15
How does cromwell and AWS batch decide which compute environment (on-demand or spot) to use?
Awarded Aug 28 at 17:31
Different results in Differential Expression analysis of Microarray Data
Awarded Aug 24 at 20:36
Bash scripting FastQC for multiple fastq files in multiple directories
Awarded Aug 20 at 14:42
Extracting p-values using corrr package in R
Awarded Aug 18 at 14:34
Splitting .bam files into separate samples for tophat2
Awarded Aug 16 at 2:12
(post deleted or otherwise unavailable)
Awarded Aug 11 at 14:46
DESEQ2 Question about results()
Awarded Aug 10 at 18:45
Using grep to get lines from a file (.tsv) that contain specific samples listed in a sample file (.tsv)
Awarded Aug 9 at 22:17
Slow bwa shm "preloading" into memory
Awarded Aug 8 at 8:00
R limma alternatives in Python
Awarded Aug 7 at 22:04
GWAS : input files for rrBLUP package in R
Awarded Aug 5 at 11:32
(post deleted or otherwise unavailable)
Awarded Aug 2 at 9:55
(post deleted or otherwise unavailable)
Awarded Jul 25 at 1:51
How to download data from SRA in Linux systems via the command line?
Awarded Jul 22 at 12:20
Convert paired-end BAM into a single-end BAM and keep all the reads
Awarded Jul 20 at 19:15
Low pass sequencing has been reported to detect common variants. How low can one go and get reliable data? Is 2X pass sequencing analysis possible?
Awarded Jul 19 at 15:51
How to quantifiy of specific genes from shotgun metagenome?
Awarded Jul 18 at 5:18
Can the header line contain arbitrary text in FASTA format?
Awarded Jul 15 at 2:06
Remove from Multi-FASTA by Sequence ID
Awarded Jul 14 at 0:16
Getting all variants in a region from ensembl
Awarded Jul 9 at 7:21
How to show that one docking is better than another with Pymol visually
Awarded Jul 8 at 6:35
How to reconstruct a target string from a large set of overlapping reads
Awarded Jul 6 at 2:18
What is the difference between Assignment and Prediction?
Awarded Jul 5 at 5:16
Converting a VCF into a FASTA given a reference with Python, R
Awarded Jul 3 at 15:16
Time complexity of the Neighbors function
Awarded Jul 1 at 12:53
What is the origin of the 'source Gene ID' references given in the 'gene_presence_absence.csv' output of Roary?
Awarded Jun 28 at 19:42
How to subset a BAM by a list of QNAMEs?
Awarded Jun 28 at 14:40
Help with DIA-Mass Spectrometry data analysis with several conditions (limma?)
Awarded Jun 25 at 15:15
Connection between Detected Genes and The Read Counts
Awarded Jun 22 at 21:33
Simultaneously get data from multiple applied gates in flowCore
Awarded Jun 22 at 15:52
Count of each sequence length from a fasta file with header using len function of python
Awarded Jun 20 at 15:10
Illumina vs PacBio vs Nanopore price
Awarded Jun 20 at 12:10
Can't load files into PopART
Awarded Jun 18 at 15:48
How to decide whether to assume 2 Gene Losses or 1 to find minimum cost trees for Gene Duplication/Expression events?
Awarded Jun 16 at 9:25
10X single cell sequencing issue
Awarded Jun 14 at 10:25
How to tell if our ligand-protein docking is good from AutoDock Vina's result
Awarded Jun 12 at 11:17
Theoretical limit of human genome compression
Awarded Jun 11 at 2:47
Masking sites in a vcf file
Awarded Jun 10 at 21:02
Find selective markers for one cluster automatically
Awarded Jun 10 at 1:49
How do I remove allele annotations from SNP Ids in .bim file?
Awarded Jun 9 at 18:20
How to compute a p-value for the similarity measurement of two DNA sequences/contigs?
Awarded Jun 7 at 0:17
How do you convert Raw Alignment Score to Bit Score?
Awarded Jun 5 at 15:06
Why can't my cromwell job localize input files? It only happens some of the time
Awarded Jun 4 at 21:51
Finding smaller sequences from within larger sequences
Awarded Jun 4 at 15:45
(post deleted or otherwise unavailable)
Awarded Jun 3 at 12:52
Automatize classical debugging in a bash script? (normal debugging by hand)
Awarded Jun 3 at 10:09
MUMmer plot error. Line 884. What to do?
Awarded Jun 3 at 7:07
(post deleted or otherwise unavailable)
Awarded Jun 3 at 5:34
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Awarded May 28 at 19:06
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