Bioinformatics

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 Editor
First edit.
Awarded 1423 times.
bwa mem hangs after a few thousand reads
Awarded Nov 29 at 19:46
Generating force-fields for ANY residue
Awarded Nov 28 at 16:22
Eigen phred score interpretation
Awarded Nov 23 at 14:26
PANTHER FUNCTIONAL CLASSIFICATION in R
Awarded Nov 23 at 0:41
How long should it take to cluster Uniref?
Awarded Nov 20 at 16:32
Get a certain gene sequence from bam/vcf and reference
Awarded Nov 17 at 22:05
Estimating rate of evolution from a phylogeny
Awarded Nov 17 at 14:32
(post deleted or otherwise unavailable)
Awarded Nov 16 at 18:00
Sequence Alignment for sequences with the same length
Awarded Nov 15 at 21:42
Confirming Identity of clone in Phylogeny
Awarded Nov 15 at 5:00
Convert genotyping results to vcf or other plink formats
Awarded Nov 11 at 13:18
Need help with binding DB API
Awarded Nov 11 at 7:21
How to add charges to a PDB file?
Awarded Nov 8 at 21:00
Annotation result for phylogenetic analysis shows no common evolutionary gene in contigs, can i change the contigs?
Awarded Nov 5 at 3:23
(post deleted or otherwise unavailable)
Awarded Nov 4 at 21:19
How can I limit blast results to exclude a specific taxonomic ID?
Awarded Nov 3 at 12:41
(post deleted or otherwise unavailable)
Awarded Oct 30 at 6:32
How to make a POST "vep/:species/region" request that is able to accomodate multiple alternate alleles for a single variant?
Awarded Oct 28 at 21:27
(post deleted or otherwise unavailable)
Awarded Oct 26 at 6:42
How do I select a subset of genes for functional enrichment(GO/KEGG) analysis from WGCNA results?
Awarded Oct 26 at 0:41
How to convert BED to GFF3
Awarded Oct 25 at 17:10
GO Enrichment Analysis
Awarded Oct 25 at 15:09
1.What size PCR product will be generated using the primers (bold and underlined) in the sequence below?
Awarded Oct 16 at 22:34
What does the different sequences represent?
Awarded Oct 11 at 12:25
How to split a Seurat cluster in several subclusters?
Awarded Oct 10 at 13:35
How to merge multiple list into a single dataframe replacing common values with 1 -python
Awarded Oct 10 at 7:51
Why do we delete scaffolds shorter than 500 - 1000 bp from the assembled genome?
Awarded Oct 6 at 18:16
How to obtain the KEGG mudule based on KEGG KO? (KEGG mudule enrichment)
Awarded Oct 6 at 2:16
Standardizing Variant IDs best practise
Awarded Oct 4 at 12:50
Generating CIGAR strings for MSA with reference
Awarded Oct 1 at 1:25
Merge fragment reads
Awarded Sep 29 at 9:28
Trimmomatic QC report shows drop in the reads and presence of overrepresented sequences
Awarded Sep 22 at 6:25
Is there a method/web server to generate Position-specific scoring matrix (PSSM) for nucleotide sequences (DNA/RNA)?
Awarded Sep 22 at 5:56
How to find amino acid sequence of a given protein
Awarded Sep 21 at 6:43
Changing transparency of markers in Chimera X
Awarded Sep 19 at 21:21
(post deleted or otherwise unavailable)
Awarded Sep 19 at 20:16
Why does DNABert use overlapping k-mers as input?
Awarded Sep 16 at 20:55
UPGMA computation
Awarded Sep 13 at 23:36
(post deleted or otherwise unavailable)
Awarded Sep 11 at 5:47
How to subset samples from a VCF file?
Awarded Sep 5 at 6:42
How to analyse qualitatively the penetration ability of particles in spheroids using fluorescent z-stacks?
Awarded Sep 4 at 15:04
How to access yeast-cyc in a programmatic way to extract the GO terms?
Awarded Sep 2 at 15:56
Question about umap using different numbers of pca components as initialization
Awarded Aug 30 at 17:55
Determining fragment mean and fragment stdev for MaSuRCA config file
Awarded Aug 28 at 14:58
Can not launch bcftools using python's subprocess module, as it only accepts first command of commands list
Awarded Aug 27 at 22:10
`bedtools`: Intersecting/map into only one interval when there are multiple matches?
Awarded Aug 26 at 17:28
Separate multiple sequence into different file, one sequence per file
Awarded Aug 26 at 4:26
scRNA: What are good dimensionality reduction/clustering parameters to get biologically plausible groupings?
Awarded Aug 25 at 23:10
Pathway Enrichment Analysis for one specific pathway?
Awarded Aug 22 at 15:16
Try to understand better how to set out an effective sample size within the MetagenomSeq package in microbiome
Awarded Aug 21 at 16:08
Feature-selection microbiome data to build a model to predict cancer
Awarded Aug 21 at 15:26
phytools add.species.to.genus could not match your species to a genus
Awarded Aug 9 at 13:09
How to find the file names referred to in the R script produced by GEO2R in GEO Accession
Awarded Aug 8 at 8:21
Journal article reference for Illumina's "near monopoly" [closed]
Awarded Aug 3 at 17:07
Reference genome (bwa -mem)
Awarded Aug 3 at 6:02
stats.sh error in BBmap package
Awarded Aug 2 at 1:48
obtaining a fragment data file bed from bam
Awarded Aug 1 at 16:21
Adding BAF and Log2 ratio to VCF file
Awarded Jul 30 at 22:18
missed cleavages combinations generation
Awarded Jul 27 at 18:51
Is there a data analysis software (free) or code that I can use to view normalized CDR3 amino acid length distributions?
Awarded Jul 27 at 8:41
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