Bioinformatics Beta

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First edit.
Awarded 977 times.
How to decide whether to assume 2 Gene Losses or 1 to find minimum cost trees for Gene Duplication/Expression events?
Awarded 18 hours ago
10X single cell sequencing issue
Awarded 2 days ago
How to tell if our ligand-protein docking is good from AutoDock Vina's result
Awarded Jun 12 at 11:17
Theoretical limit of human genome compression
Awarded Jun 11 at 2:47
Masking sites in a vcf file
Awarded Jun 10 at 21:02
Find selective markers for one cluster automatically
Awarded Jun 10 at 1:49
How do I remove allele annotations from SNP Ids in .bim file?
Awarded Jun 9 at 18:20
How to compute a p-value for the similarity measurement of two DNA sequences/contigs?
Awarded Jun 7 at 0:17
How do you convert Raw Alignment Score to Bit Score?
Awarded Jun 5 at 15:06
Why can't my cromwell job localize input files? It only happens some of the time
Awarded Jun 4 at 21:51
Finding smaller sequences from within larger sequences
Awarded Jun 4 at 15:45
(post deleted or otherwise unavailable)
Awarded Jun 3 at 12:52
Automatize classical debugging in a bash script? (normal debugging by hand)
Awarded Jun 3 at 10:09
MUMmer plot error. Line 884. What to do?
Awarded Jun 3 at 7:07
(post deleted or otherwise unavailable)
Awarded Jun 3 at 5:34
(post deleted or otherwise unavailable)
Awarded May 28 at 19:06
Access base aligned to particular reference position
Awarded May 27 at 9:15
Is SBOL-VOWS operational?
Awarded May 25 at 17:20
Smith-Waterman traceback with large gaps
Awarded May 25 at 10:25
Important genes beyond PAM50 for breast cancer classification
Awarded May 24 at 17:27
How to demultiplex a mix of single-indexed and dual-indexed samples
Awarded May 21 at 9:05
What is the right way of calculating a Phred score by hand?
Awarded May 20 at 11:55
Combining dataTracks in Gviz by averaging or subtraction
Awarded May 19 at 17:15
Fast way to count number of reads and number of bases in a fastq file?
Awarded May 18 at 10:12
Bruker MALDI-TOF bacteria species identification scoring algorithm
Awarded May 17 at 19:56
How can I extract sequences from FASTA file using OTUs ID?
Awarded May 17 at 11:51
Get frequency of index sequences of fastq file
Awarded May 17 at 10:06
Solutions to reference bias issue
Awarded May 16 at 12:16
Calculating most abundant transcript from RNA-Seq data
Awarded May 14 at 4:55
fastq file format unknown
Awarded May 13 at 11:56
Minimizing particle-flow grid mapping time of a protein surface using spherical-coordinates and differentiation encoding [closed]
Awarded May 11 at 10:06
Is it possible to correct bond order and conectivity problems in an sdf file according to mol2 files?
Awarded May 8 at 3:11
How to make a video of a gromacs gmx dump standard output with VMD
Awarded May 7 at 12:07
Getting exact mismatch data from multiple sequence alignment
Awarded May 6 at 13:56
Base abbreviations other than ACTGU in sequence file
Awarded May 6 at 0:41
Base abbreviations other than ACTGU in sequence file
Awarded May 5 at 17:33
(post deleted or otherwise unavailable)
Awarded May 4 at 3:51
What is the meaning of split read?
Awarded Apr 29 at 9:13
What are common ways to calculate gene length for TPM calculations? [duplicate]
Awarded Apr 28 at 8:25
How do I plot clusters based on DNA sequence alignment?
Awarded Apr 28 at 3:35
(post deleted or otherwise unavailable)
Awarded Apr 26 at 18:39
What are the units for the force output by nstfout, the velocity output by nstvout, and the coordinates output by nstxout in gromacs?
Awarded Apr 24 at 20:34
Tajima-Nei Distance estimate with BioPerl
Awarded Apr 23 at 21:50
seqff script got trouble after samtools treatment
Awarded Apr 22 at 7:41
Can an alternate allele be more common than a reference allele?
Awarded Apr 21 at 12:50
Download multiple SRA files
Awarded Apr 21 at 12:23
(post deleted or otherwise unavailable)
Awarded Apr 20 at 17:21
Sequence allignment with suffix array?
Awarded Apr 20 at 17:21
Nextflow: Why does non-local reference to $projectDir break hash stability and hence break task cache?
Awarded Apr 19 at 9:59
Manta SV caller: I can't find a file in the path specified by the user guide
Awarded Apr 9 at 12:26
(post deleted or otherwise unavailable)
Awarded Apr 8 at 20:35
(post deleted or otherwise unavailable)
Awarded Apr 8 at 8:30
Why is there no GT-entry in my .vcf file from bacteria
Awarded Apr 7 at 2:40
How to convert txt.gz into fastq.gz?
Awarded Apr 6 at 13:55
How low does an E-Value need to be for a gene to code for the same protein as query?
Awarded Apr 5 at 0:10
File format of substitution matrix in clustalw
Awarded Mar 30 at 17:35
Combine two alleles to genotype locus?
Awarded Mar 28 at 9:26
Nextflow: No signature of Method: chr() is applicable for argument types; unknown variable
Awarded Mar 21 at 18:11
Nextflow error: can not invoke method minus () on null object
Awarded Mar 20 at 3:21
How to interpret track height in Chipseq?
Awarded Mar 17 at 20:40
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