Bioinformatics Beta

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First edit.
Awarded 813 times.
Identifying nested/overlapping reading frames in nucleotide sequences
Awarded 6 hours ago
How to run Jupyter script on Slurm HPC
Awarded Sep 24 at 13:21
Find intersection among multiple columns and find the intersected elements
Awarded Sep 17 at 12:35
Installing HiC-Pro issues
Awarded Sep 16 at 20:07
Finding original papers for gene annotations
Awarded Sep 15 at 21:26
(post deleted or otherwise unavailable)
Awarded Sep 14 at 12:02
Is it wise to use RepeatMasker on prokaryotes?
Awarded Sep 7 at 15:41
How to do VCF annotation?
Awarded Sep 5 at 7:18
Core genome too short
Awarded Sep 3 at 9:18
Sort reads in BAM file based on presence of specific deletion?
Awarded Aug 27 at 15:56
plink: --update-name vs. editing the BIM
Awarded Aug 26 at 18:18
workaround for error: Bad CPU type in executable c
Awarded Aug 23 at 11:40
the variation between treatments is less than the variation between replicates in RNA-seq data
Awarded Aug 21 at 8:26
GWAS MAC filter Interpretation
Awarded Aug 21 at 6:35
Biohackers Netflix - DNA to binary and video
Awarded Aug 21 at 0:26
Find rsIDs for GRCh37 SNPs and rsIDs for GRCh38 SNPs and compare for overlap
Awarded Aug 20 at 23:46
NO_COOR reads not in a single block at the end 0 -1
Awarded Aug 19 at 7:05
Master of Pores Installation Mac OS Mojave 10.14
Awarded Aug 18 at 3:41
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Awarded Aug 18 at 2:11
(post deleted or otherwise unavailable)
Awarded Aug 13 at 11:17
Interpreting this plot from GSEA
Awarded Aug 11 at 15:50
Issues with AutoDock Vina
Awarded Aug 11 at 15:05
Using variables with fasterq-dump?
Awarded Aug 10 at 16:16
Obtaining identifier from plot of sequence GC%
Awarded Aug 7 at 15:16
(post deleted or otherwise unavailable)
Awarded Aug 7 at 12:15
Power calculation for GWAS/EWAS
Awarded Aug 5 at 14:36
(post deleted or otherwise unavailable)
Awarded Aug 4 at 14:16
What are the symbols of $*$ and '$\_$' in an unknown alignment format for HLA data from the IMGT dataset?
Awarded Aug 2 at 3:27
Transcribing DNA exons and append transcripts into a list
Awarded Jul 31 at 13:42
Seurat FindMarkers() output interpretation
Awarded Jul 30 at 14:04
NCT search in PubMed via Entrez (python)
Awarded Jul 29 at 10:34
How can I take cell number into account to find total RNA expression?
Awarded Jul 28 at 11:35
Understanding the fasta File Format
Awarded Jul 27 at 19:20
Basic question about finding mRNA sequence in transcriptome
Awarded Jul 26 at 15:17
Split fasta file based on groups in header information and output as separate files
Awarded Jul 26 at 14:35
mBED has time complexity $O(n \lg n)$, claimed by Clustal Omega paper, why?
Awarded Jul 25 at 8:26
Comparing aligned amino acids to codon
Awarded Jul 23 at 6:12
Sequence alignment using BWT
Awarded Jul 23 at 4:07
How to add cluster name to metadata in Seurat?
Awarded Jul 20 at 17:48
Human Herpes Virus, fusion motif in protein vs. SARS-CoV-2?
Awarded Jul 19 at 20:51
VCF spec: is it possible to have other alleles in addition to the MISSING value ('.') in ALTS?
Awarded Jul 18 at 17:55
Removing data from OrthoFinder output prefix
Awarded Jul 17 at 3:57
Mathematics of “eXpress” paper
Awarded Jul 16 at 21:33
(post deleted or otherwise unavailable)
Awarded Jul 15 at 22:46
Searching for start and stop codons for protein sequencing of contigs
Awarded Jul 15 at 15:07
Fix dash/empty ALT alleles for deletions in VCF
Awarded Jul 9 at 10:05
(post deleted or otherwise unavailable)
Awarded Jul 8 at 16:01
Question about Using MDAPackmol (packmol in python)
Awarded Jul 7 at 20:25
BWA: Detecting Variation between Reference Genome and Short-Read Sequences
Awarded Jul 7 at 17:27
How many markers or loci are used in forensic DNA profiling and the effect of the DNA sequencing?
Awarded Jul 4 at 18:34
Calculating average coverage for .bam files (sequence data)
Awarded Jul 4 at 13:11
(post deleted or otherwise unavailable)
Awarded Jul 2 at 16:06
(post deleted or otherwise unavailable)
Awarded Jul 1 at 23:47
Multiple input & output files?
Awarded Jun 29 at 14:08
(post deleted or otherwise unavailable)
Awarded Jun 28 at 12:01
awk field separtor
Awarded Jun 26 at 13:35
How to design DESeq2 LRT model with individuals nested in 2 levels?
Awarded Jun 23 at 17:16
How do I set a neural network to loop multiple times and average the resulting values?
Awarded Jun 22 at 23:50
Can't align 2 sequences, (MAFFT killed)
Awarded Jun 20 at 13:42
How to aggregate multiple MAF files together?
Awarded Jun 19 at 17:07
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