Bioinformatics

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First edit.
Awarded 1058 times.
How to download metadata in SRA (i.e., SraRunTable.txt) using Unix commands?
Awarded 2 days ago
Plink error: --check-sex/--impute-sex requires at least one polymorphic X chromosome locus
Awarded Jan 19 at 5:26
How to process multiple VCF files present in a 2 folders and create afd plots
Awarded Jan 16 at 8:26
How to format my file using linux tools?
Awarded Jan 14 at 22:27
Mapping NCBI taxID to divergence time?
Awarded Jan 13 at 8:16
(post deleted or otherwise unavailable)
Awarded Jan 12 at 17:20
use same output in two processes in nextflow dsl2
Awarded Jan 10 at 18:04
How to make MSA for contact prediction?
Awarded Jan 1 at 23:47
makeblastdb creating multiple files of unexpectedly large sizes
Awarded Dec 28 '21 at 11:11
Complete List of IUPAC Chemical Naming Conventions for Formal and Trivial Names?
Awarded Dec 25 '21 at 14:50
GSM Modelling Issues. Problems replicating results during FBA/FVA Optimization
Awarded Dec 21 '21 at 10:02
Comparing homozygosity of k-mer plots
Awarded Dec 16 '21 at 17:41
10X low rate of correct barcodes was observed for the candidate chemistry choices for the input
Awarded Dec 13 '21 at 1:31
BLAST server download
Awarded Dec 8 '21 at 19:17
Generate an appropriate output from DNaSP6 to Arlequin program
Awarded Dec 4 '21 at 6:08
Error generating count data using featurecounts in R
Awarded Dec 1 '21 at 2:25
Generating PDB file for custom DNA sequence
Awarded Nov 24 '21 at 19:45
What does 'Human Alternative sequence Gene' mean in Ensembl?
Awarded Nov 24 '21 at 1:33
What exactly is a reasonable evolutionary criterion? [closed]
Awarded Nov 18 '21 at 13:03
How do I increase the minimum dot size in Seurat's DotPlot function?
Awarded Nov 18 '21 at 7:35
How to analyze IGV alignment
Awarded Nov 18 '21 at 0:41
(post deleted or otherwise unavailable)
Awarded Nov 16 '21 at 22:51
How to map list items which are in groups in the dictionary values and return keys corrosponding it?
Awarded Nov 16 '21 at 12:16
Error while parsing gene bank file using Biopython
Awarded Nov 15 '21 at 21:27
How do I increase the minimum dot size in Seurat's DotPlot function?
Awarded Nov 13 '21 at 0:26
Snakemake Fastqc: "Multiple run or shell keywords in rule run_fastqc."
Awarded Nov 12 '21 at 0:05
Best R program to use for RNA seq analysis
Awarded Nov 3 '21 at 10:30
I have two fasta files READ1 and READ 2. How to identify which one is the reverse and the forward?
Awarded Nov 2 '21 at 17:30
In Pygraphviz, How can I assign edge colors according to edge weights?
Awarded Oct 28 '21 at 3:45
In Seurat, how can I export cluster IDs to csv files
Awarded Oct 27 '21 at 9:17
How to de novo hybrid assemble with Pacbio CCS and Illumina PE reads
Awarded Oct 24 '21 at 15:01
How to compare sequences of genes obtained after whole-genome sequencing to reference genome?
Awarded Oct 21 '21 at 20:50
How to Find List of Genomic Coordinates from List of Genes using UCSC Website?
Awarded Oct 21 '21 at 3:31
How to convert Sars-CoV-2 ORF1ab codon positions to ORF1b positions?
Awarded Oct 16 '21 at 17:37
Shotgun analysis: Where and how to start?
Awarded Oct 14 '21 at 11:57
(post deleted or otherwise unavailable)
Awarded Oct 14 '21 at 9:10
How to convert the chromosome position for insertions/deletions to rsIDs in a GWAS summary statistics?
Awarded Oct 11 '21 at 7:21
(post deleted or otherwise unavailable)
Awarded Oct 3 '21 at 21:20
Why is bcl2fastq2 taking so long to calculate stats?
Awarded Sep 29 '21 at 18:42
How to copy only certain counts for genes in tsv file to new file in linux
Awarded Sep 25 '21 at 14:33
Demovir produces an empty output
Awarded Sep 22 '21 at 3:10
Generating sequence from HMM [duplicate]
Awarded Sep 19 '21 at 15:11
snakemake multiple parameters for multiple input and single output in snakemake. ConbineGVCFs gatk problem
Awarded Sep 16 '21 at 14:19
Negative binomial modeling of RNA-Seq data
Awarded Sep 15 '21 at 14:36
Remove/delete sequences by ID from multifasta
Awarded Sep 15 '21 at 5:42
Help to understand the code for dipeptide composition calculation (in python)
Awarded Sep 11 '21 at 14:15
(post deleted or otherwise unavailable)
Awarded Sep 10 '21 at 17:10
(post deleted or otherwise unavailable)
Awarded Sep 10 '21 at 16:57
Why are my Nextflow processes not executing in parallel?
Awarded Sep 4 '21 at 19:26
Translate all reads in a .fastq into protein sequence from deep mutational scanning experiment
Awarded Sep 1 '21 at 16:15
How does cromwell and AWS batch decide which compute environment (on-demand or spot) to use?
Awarded Aug 28 '21 at 17:31
Different results in differential expression analysis of microarray data
Awarded Aug 24 '21 at 20:36
Bash scripting FastQC for multiple fastq files in multiple directories
Awarded Aug 20 '21 at 14:42
Extracting p-values using corrr package in R
Awarded Aug 18 '21 at 14:34
Splitting .bam files into separate samples for tophat2
Awarded Aug 16 '21 at 2:12
(post deleted or otherwise unavailable)
Awarded Aug 11 '21 at 14:46
DESEQ2 Question about results()
Awarded Aug 10 '21 at 18:45
Using grep to get lines from a file (.tsv) that contain specific samples listed in a sample file (.tsv)
Awarded Aug 9 '21 at 22:17
Slow bwa shm "preloading" into memory
Awarded Aug 8 '21 at 8:00
R limma alternatives in Python
Awarded Aug 7 '21 at 22:04
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