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Bioinformatics

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First edit.
Awarded 1533 times.
How to adjust QIIME DADA2 parameters to avoid eliminating real sequences
Awarded Sep 10 at 11:17
Too many requests error when querying NCBI
Awarded Sep 6 at 11:09
How to download the same 18S rRNA gene region for multiple species?
Awarded Sep 2 at 10:56
snakefile not able to find files for rule trimming
Awarded Aug 22 at 15:28
Converting Plink .bed files to .bcf *with* an AC (allele count) field?
Awarded Aug 21 at 23:41
Deseq2 model formula and longitudinal experimatal (or time-series) designs
Awarded Aug 19 at 14:01
What parameter and threshold to choose to get significant pathways from MetaboAnlyst pathway analysis results?
Awarded Aug 16 at 6:56
Differential gene expression (aiming to create heatmap) for raw RNAseq count data from different publications - how to?
Awarded Aug 15 at 16:21
How can I normalize DNAseq nanopore metagenomics data?
Awarded Aug 14 at 9:49
Understanding VCF file records
Awarded Aug 8 at 15:05
Cannot invoke "Object.toString()" but Uniprot IDs are there
Awarded Aug 7 at 14:21
(post deleted or otherwise unavailable)
Awarded Aug 5 at 16:08
What is the significance of the weak inferCNV signal in non-malignant cells in culture that underwent scRNA-seq?
Awarded Aug 4 at 20:28
Extracting metadata for a list of BOLD BINs
Awarded Aug 1 at 16:24
Finding persistence length using OxDNA on python
Awarded Aug 1 at 12:47
How to visualize Similarity score matrix with CoNet app of Cytoscape
Awarded Jul 27 at 14:26
How can I import xgmml cytoscape networks into a new session file such that style formatting can be applied?
Awarded Jul 26 at 18:07
windows shell -- running igblast: "BLAST query/options error: Germline annotation database ... internal_data directory cannot be found"
Awarded Jul 24 at 14:49
Extract the Variables with the Most Influence on the Ordination in an LDA
Awarded Jul 22 at 10:16
Facing problem with BLASTx using BioPython in Google Colab
Awarded Jul 15 at 17:27
KEGG IDs and gene IDs going unrecognized in Cytoscape metscape software
Awarded Jul 15 at 4:26
Tools for Protein-Protein interaction prediction?
Awarded Jul 14 at 11:40
Waterman-Smith-Beyer implementation in Python
Awarded Jul 9 at 0:48
Transposable elements in phylogenetics
Awarded Jul 6 at 9:27
Cox model with percentage interpretation
Awarded Jul 3 at 11:50
Running bwa mem and samtools in one script on a linux cluster
Awarded Jul 2 at 0:49
(post deleted or otherwise unavailable)
Awarded Jul 1 at 11:06
RNA virus (HIV, HCV, Influenza, or SARS-CoV-2) datasets with corresponding fitness values
Awarded Jun 27 at 18:49
(post deleted or otherwise unavailable)
Awarded Jun 21 at 5:11
Normalization in Sequence Analysis Research
Awarded Jun 20 at 10:10
Protein atlas rna-seq vs protein expression region missmatch
Awarded Jun 19 at 23:05
Is there a way to download all data containing amino acid sequence - secondary protein structure from protein data bank
Awarded Jun 19 at 11:05
Passing data from the Agilent Trimmer utility to bwa-mem2 via a named pipe
Awarded Jun 18 at 9:58
PCA of bulk RNA-seq doesn't show clustering and show large variation in general
Awarded Jun 17 at 11:16
Issues with adapter trimming (Trim Galore)
Awarded Jun 12 at 14:21
Are there efficient tools for PANGENOMES visualization (GFA size >2GB)?
Awarded Jun 12 at 9:36
Area under the curve at each time point
Awarded Jun 10 at 20:40
Area under the curve at each time point
Awarded Jun 8 at 20:16
Reasons for extremely low number of DESeq identified differentially expressed genes after RNAseq?
Awarded May 31 at 19:48
Low confidence score from alphafold2_multimer_v3
Awarded May 30 at 22:25
Novogene sequencing archives
Awarded May 29 at 17:51
Is there some tool so find run accessions metadata?
Awarded May 24 at 23:05
Flatten Background of Metamorph, what is the image processing done?
Awarded May 24 at 12:32
Help Understanding the Greedy Motif Search Algorithm from Textbook
Awarded May 20 at 22:05
I have few genes and would like to retrieve their gene expression. Please any one help me how to retrieve the gene expression
Awarded May 17 at 6:01
Biopython / ETE3 get subtree of a newick tree
Awarded May 7 at 18:20
cellranger-arc throws an error when demultiplexing
Awarded Apr 30 at 5:31
Memory issues in scrna_seq pseudobulk aggregation (for muscat Differential State Analysis)
Awarded Apr 26 at 16:16
How to split FASTQ reads without re-running `fastq-dump`?
Awarded Apr 23 at 7:33
How much data to expect from metabarcoding?
Awarded Apr 22 at 12:30
Fragment mass tolerance in proteomics analysis
Awarded Apr 20 at 18:42
Using Python for Monte Carlo simulation for predicting protein nucleation aggregation
Awarded Apr 20 at 10:08
I want to know what are the main differences between two R Objects constructed for analysis of microbiome data: phyloseq and TreeSummarizedExperiment
Awarded Apr 18 at 8:56
How to specify the list of contigs in AGP gap file used for ENA submissions
Awarded Apr 17 at 11:41
JbrowseR usage - get error with the simplest example
Awarded Apr 15 at 5:12
How to align genomic sequence with corresponding amino acid sequence
Awarded Apr 11 at 11:49
(post deleted or otherwise unavailable)
Awarded Apr 10 at 23:05
How to import data from cell ranger to R (Seurat) using Read10X?
Awarded Apr 7 at 0:02
How can I install the R package R4ClinicalTrial?
Awarded Apr 4 at 13:45
Need to find an intersect of sequences inside fasta files (no standardized sequence names)
Awarded Apr 3 at 18:08
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