I am interested in using RDP classifier and RDPTools at the command line. In following the docs from RDP, I ran into this issuethis issue during the build:, after running https://github.com/rdpstaff/RDPTools/issues/22make:
BUILD FAILED
/home/denir/bin/RDPTools/Clustering/nbproject/build-impl.xml:896: The following error occurred while executing this line:
/home/denir/bin/RDPTools/Clustering/nbproject/build-impl.xml:1470: The following error occurred while executing this line:
/home/denir/bin/RDPTools/AlignmentTools/nbproject/build-impl.xml:896: The following error occurred while executing this line:
/home/denir/bin/RDPTools/AlignmentTools/nbproject/build-impl.xml:1414: The following error occurred while executing this line:
/home/denir/bin/RDPTools/ReadSeq/nbproject/build-impl.xml:920: The following error occurred while executing this line:
/home/denir/bin/RDPTools/ReadSeq/nbproject/build-impl.xml:300: Compile failed; see the compiler error output for details.
Total time: 1 second
Makefile:15: recipe for target 'Clustering/dist/Clustering.jar' failed
make: *** [Clustering/dist/Clustering.jar] Error 1
As one user suggested, I have tried downgrading from ant 1.10 to ant 1.9, this didn't work for me.
I would rather not downgrade to JDK 7 as another user suggested if possible so I am looking for alternatives. One user was able to install rdp classifier with bioconda. I was able to do that OK. However, I'm not sure where to go from here? The tutorial provided with commands like:
java -Xmx2g -jar ~/RDPTools/Clustering.jar derep -m '#=GC_RF' -o derep.fa all_seqs.ids all_seqs.samples alignment/*.fasta
Depend on the build created using the install method recommended by RDP.
Does anyone else use rdp classifier installed via conda? Is there a quickstart guide out there that I could refer to? Thanks so much for your help!
