I would like to calculate what is the number of region which is lost or gained between two condition,such as Stem cell vs Leukemic stemcell, atac seq data.

How do I get the information after peak calling such as what tools should i be using ?

I would like to calculate what is the number of region which is lost or gained between two condition,such as Stem cell vs Leukemic stemcell, atac seq data.

How do I get the information after peak calling such as what tools should i be using ?

As shown in the paper figure 1c I would like to do the same. How do i calculate the gain and loss of peak relative to a condition paper