Timeline for Unmapping Alternative reads in BAM file
Current License: CC BY-SA 4.0
7 events
| when toggle format | what | by | license | comment | |
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| Apr 9, 2020 at 10:53 | history | edited | Kamil S Jaron | CC BY-SA 4.0 |
link made into a hyperlink
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| Apr 9, 2020 at 10:19 | history | edited | Thanh Nguyen | CC BY-SA 4.0 |
added 58 characters in body; edited title
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| Apr 9, 2020 at 10:17 | comment | added | Thanh Nguyen | thank you for your comment. I'm not so familiar with samtools, actually, any answer for me is valuable. For the HLA allele, I use package like optitype and kourami, they can handle it if I can give them the correct input. | |
| Apr 9, 2020 at 9:43 | comment | added | StupidWolf | the only thing i am not sure about where do your HLA reads go in the genome, if they are multimapping or you know that they map to a specific location, you can also do something similar to above | |
| Apr 9, 2020 at 9:41 | comment | added | StupidWolf | hmmm are you familiar with samtools? you can convert unmapped reads on the fly (on the console) and then remap it and output a bam file | |
| Apr 9, 2020 at 9:00 | review | First posts | |||
| Apr 9, 2020 at 10:53 | |||||
| Apr 9, 2020 at 8:56 | history | asked | Thanh Nguyen | CC BY-SA 4.0 |