Timeline for How to extract unmatched reads using bwa and samtools?
Current License: CC BY-SA 4.0
8 events
| when toggle format | what | by | license | comment | |
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| Jun 21, 2020 at 20:23 | comment | added | M__♦ | Thanks!!! .. :-) | |
| Jun 21, 2020 at 19:10 | vote | accept | Dmitrii Trubetskoy | ||
| Jun 21, 2020 at 19:02 | comment | added | M__♦ | Hi @DmitriiTrubetskoy please remember to upvote ""ATpoint" for their answer and mark the answer as "accepted" if this correctly answers your question. | |
| Jun 21, 2020 at 16:12 | comment | added | user3051 | Internal files that bwa needs for alignment (suffix arrays, burrows-wheeler transformed genomes...), nothing that you as a user have to worry about. Most are binary anyway. | |
| Jun 21, 2020 at 15:32 | comment | added | Dmitrii Trubetskoy |
Thanks! I also wonder what are these 5 additional files after indexing, e.g. *.fa.amb, *.fa.ann, *.fa.bwt, *.fa.pac and *.fa.sa ?
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| Jun 21, 2020 at 12:45 | comment | added | user3051 |
Unnecessary since this is only a suffix, the content of the file is not changed. You could have simply renamed the file with mv. I am 99.99% sure bwa does not care about the suffix of the fasta.
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| Jun 21, 2020 at 11:52 | comment | added | Dmitrii Trubetskoy |
Thank you! What about step 0 - converting from .fna to .fa?
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| Jun 21, 2020 at 11:34 | history | answered | user3051 | CC BY-SA 4.0 |