Timeline for How to reduce the occupied RAM when you are dealing with a very sparse matrix in a single-cell Experiment in R?
Current License: CC BY-SA 4.0
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| Jul 6, 2020 at 19:14 | comment | added | M__♦ | .. me neither but they are doing Plasmodium (malaria, P. falciparum?) so there will be 24-hour periodicity in the RNA expression depending on what in vitro assay they are doing. That would make it a bit complicated. They also appear to do martial arts - its a tough field malaria ;-) | |
| Jul 6, 2020 at 17:49 | comment | added | StupidWolf | good suggestions @Michael. It's not a big dataset, 3500+ cells, so you can do PCA or tSNE on the dimension reduced data. I don't see the OP's calculation though, or what is the larger question.. | |
| Jul 6, 2020 at 16:10 | comment | added | M__♦ | I prefer @haci 's work around, thanks are not a cool way to say thanks.but anyway | |
| Jul 6, 2020 at 15:10 | comment | added | Spartan 117 | Even PCA gives problem if it ingests this sce-object. Anyway I solved changing the computer with one more performative. Very good to know that GCP is free for three months. Thank you! | |
| Jul 6, 2020 at 11:35 | history | edited | M__♦ | CC BY-SA 4.0 |
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| Jul 6, 2020 at 11:11 | history | edited | M__♦ | CC BY-SA 4.0 |
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| Jul 6, 2020 at 10:58 | history | answered | M__♦ | CC BY-SA 4.0 |