Timeline for Getting Unique Identifier List for GEO Datasets NCBI
Current License: CC BY-SA 4.0
4 events
| when toggle format | what | by | license | comment | |
|---|---|---|---|---|---|
| Jan 6, 2021 at 0:03 | comment | added | k1sauce | Oh you're right, I did something similar before, i though it was GEOquery but i guess i don't remember... Ok, can you download the text file like: "Send To" -> "File" -> "Format" Summary (text) And then do something like: cat gds_result.txt | grep 'Accession: GSE' | cut -f 3 | cut -f 2 -d ' ' | sort > gse.txt | |
| Jan 2, 2021 at 5:17 | comment | added | Pawan Verma | GEOquery would download datasets for a given accession ID. R provides a library bioconductor.org/packages/release/bioc/html/GEOmetadb.html which contains metadata for microarray studies. I couldn't find anything similar to this for RNASeq studies so had to resort to the GUI. | |
| Dec 31, 2020 at 22:33 | review | First posts | |||
| Jan 2, 2021 at 0:55 | |||||
| Dec 31, 2020 at 22:30 | history | answered | k1sauce | CC BY-SA 4.0 |