Timeline for How do I force Cromwell / WDL to put input files in the same directory?
Current License: CC BY-SA 4.0
7 events
| when toggle format | what | by | license | comment | |
|---|---|---|---|---|---|
| May 9, 2023 at 15:00 | answer | added | user2919167 | timeline score: 1 | |
| Jan 22, 2021 at 6:28 | comment | added | Roger V. | I am talking about the wdl code: one must pass all the files explicitly to the task, even if they do not appear in the command line. Every task is run from a separate folder. | |
| Jan 21, 2021 at 22:37 | vote | accept | Greg Dougherty | ||
| Jan 21, 2021 at 22:37 | answer | added | Greg Dougherty | timeline score: 0 | |
| Jan 21, 2021 at 22:31 | comment | added | Greg Dougherty | @Vadim the code does not reference RefFai or RefDict, only Ref. | |
| Jan 14, 2021 at 8:29 | comment | added | Roger V. | We did have a similar problem and there is a solution to it... however, I have hard time recalling it, sinc eit was a while ago (and we abandoned WDL). Perhaps you could paste the code for the task, which would make it easier to see, if anything is missing. | |
| Jan 13, 2021 at 3:09 | history | asked | Greg Dougherty | CC BY-SA 4.0 |