Timeline for Querying The Cancer Genome Atlas (TCGA) for gene expression
Current License: CC BY-SA 4.0
4 events
| when toggle format | what | by | license | comment | |
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| Apr 4, 2022 at 9:58 | vote | accept | fuad021 | ||
| Feb 19, 2022 at 18:07 | comment | added | haci |
Yes, you can change the cancer type and re-use the query but my main concern is the type of data that this query would return. Your query fetches count data via the HTSeq - Counts filter but in the posted image, there are floats instead of integers (gene counts), this can be normalized data. If I remember correctly, HTSeq-Counts should be returning actual counts, so integers.
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| Feb 19, 2022 at 17:25 | comment | added | fuad021 | I've added an image of the UCI dataset. I just need to perform a query that returns similar kind of gene expression level tabular data. As the query only returns TCGA-BRCA data only, will replicating the query for other four types create similar (biologically equivalent and meaningful) kind of dataset? | |
| Feb 19, 2022 at 8:02 | history | answered | haci | CC BY-SA 4.0 |