Timeline for how to do manual search on NCBI with biopython and add link to publication
Current License: CC BY-SA 4.0
14 events
| when toggle format | what | by | license | comment | |
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| Feb 9, 2023 at 14:06 | comment | added | M__♦ | @MarineBergot its the database. The output of the above search using the nucleotide database is here | |
| Feb 8, 2023 at 21:35 | comment | added | Marine Bergot | @M__ thanks for your answer. I arrived in the same point but i need both, latest and refseq. For me latest is working with organism and no partial but refseq is not working even alone. do you have results with Microbacterium[Organism] AND refseq[Filter]? could it be related to version ? | |
| Feb 8, 2023 at 21:23 | history | edited | M__♦ | CC BY-SA 4.0 |
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| Feb 8, 2023 at 21:22 | comment | added | M__♦ | @MarineBergot I've answered in the comments of comments | |
| Feb 8, 2023 at 20:35 | vote | accept | Marine Bergot | ||
| Feb 8, 2023 at 20:35 | comment | added | Marine Bergot | @M__ by the way, do you have any idea why my current research is not returning anything? | |
| Feb 8, 2023 at 20:32 | comment | added | M__♦ | Thanks @MarineBergot please remember to "accept" if it's useful. You can always switch "accepted" posts if there's a better way posted later. | |
| Feb 8, 2023 at 20:28 | comment | added | Marine Bergot | @M__ thanks a lot for your help ! your range idea it's pretty clever, it will already be much better than checking by hand! | |
| Feb 8, 2023 at 19:31 | history | edited | M__♦ | CC BY-SA 4.0 |
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| Feb 8, 2023 at 19:14 | history | edited | M__♦ | CC BY-SA 4.0 |
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| Feb 8, 2023 at 19:08 | comment | added | M__♦ |
@terdon I don't believe there is a tag [publication], there is [publication date], which is better than [year]. However, it's the same answer, the sequence output of most fields are represented only by a small number of authors and only those authors are searched.
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| Feb 8, 2023 at 19:03 | comment | added | terdon♦ |
I think the OP wants to limit the results to only those genomes whose NCBI BioProject entry includes a Publications field.
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| Feb 8, 2023 at 19:01 | history | edited | M__♦ | CC BY-SA 4.0 |
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| Feb 8, 2023 at 18:55 | history | answered | M__♦ | CC BY-SA 4.0 |