Timeline for How to extract a list of hydrogen bonds from a PDB?
Current License: CC BY-SA 4.0
6 events
| when toggle format | what | by | license | comment | |
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| Mar 6, 2023 at 11:53 | comment | added | jgreener | DSSP gives you hydrogen bonds, not sure how it works for complexes though. | |
| Mar 3, 2023 at 19:24 | answer | added | Soerendip | timeline score: 1 | |
| Mar 2, 2023 at 14:46 | comment | added | pippo1980 | files.rcsb.org/pub/pdb/validation_reports/vf/7vf2/… : Atom-1 Atom-2 Interatomic distance (Å) Clash overlap (Å) : 2:B:1616:LYS:HA 2:B:1616:LYS:HD2 1.71 0.42 there is something wrong with k1616 as per validation report states ... see atoms nomenclature in Lys ligand-expo.rcsb.org/reports/L/LYS/LYS_D3L3.gif | |
| Mar 2, 2023 at 14:14 | comment | added | pippo1980 | do you need alpha chain hydrogen interactions or side chains hydrogen interactions ? I believe most of the alpha helics and beta sheets emerge from apha carbon hydrogen bonds so thet'll be a huge number of interaction to be shown, but could be wrong | |
| Mar 1, 2023 at 13:38 | history | edited | Spartan 117 | CC BY-SA 4.0 |
added 389 characters in body
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| Mar 1, 2023 at 13:02 | history | asked | Spartan 117 | CC BY-SA 4.0 |
