Timeline for How are the "effect_allele" and "other_allele" bases chosen in a PGS file from the PGS Catalog?
Current License: CC BY-SA 4.0
4 events
| when toggle format | what | by | license | comment | |
|---|---|---|---|---|---|
| Jun 15, 2023 at 7:42 | comment | added | Cristian Riccio | Thanks a lot. This answer is really helpful. Yes, I checked the scoring file of GRCh37 and there were no mismatches, so it must be as you say that the reference base changed between GRCh37 and GRCh38. I also thought inverting the sign was not OK but now you convinced me. Indeed, it add weight if you have the effect allele. Cheers! | |
| Jun 15, 2023 at 7:40 | vote | accept | Cristian Riccio | ||
| Jun 14, 2023 at 20:36 | history | edited | BigMistake | CC BY-SA 4.0 |
added 1163 characters in body
|
| Jun 14, 2023 at 19:42 | history | answered | BigMistake | CC BY-SA 4.0 |