Skip to main content
5 events
when toggle format what by license comment
Dec 30, 2023 at 15:36 comment added Yossi Farjoun However, the fact that the output of gatk SortSam isn't valid is disconcerting. Can you see if it's a small part of your fasta file that is the problem? perhaps chop it in half and see if you can reproduce it on a smaller fastq?
Dec 30, 2023 at 15:31 comment added Yossi Farjoun I don't think that you need to resort as minimap should output the reads in the same order that they were ingested
Dec 22, 2023 at 22:30 history edited Ram RS CC BY-SA 4.0
deleted 17 characters in body
Dec 21, 2023 at 22:28 history edited Ram RS CC BY-SA 4.0
deleted 202 characters in body
Dec 21, 2023 at 21:42 history asked Shwarz CC BY-SA 4.0