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edited Jan 17 at 9:22

15.1k
5
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Does anyone know what conditions must be true for Picard to put a ? where I expect a number?

Here is an example from the output of the tool CollectWgsMetrics:

❯ cat sample.wgs_metrics.txt | head -n8 | tail -n2 | verticalize | grep FOLD
FOLD_80_BASE_PENALTY    1.33476
FOLD_90_BASE_PENALTY    2.288159
FOLD_95_BASE_PENALTY    ?

Verticalize is a little CLI tool I've forever been using by Pierre Lindenbaum: verticalize. Easy to compile and I toss it in my ~/bin every time I get a new computer.

Code searching (link) didn't reveal anything, and googling isn't returning anything obvious either.

[Verticalize is a little CLI tool I've forever been using by Pierre Lindenbaum: verticalize. Easy to compile and I toss it in my ~/bin every time I get a new computer.]

Does anyone know what conditions must be true for Picard to put a ? where I expect a number?

Here is an example from the output of the tool CollectWgsMetrics:

❯ cat sample.wgs_metrics.txt | head -n8 | tail -n2 | verticalize | grep FOLD
FOLD_80_BASE_PENALTY    1.33476
FOLD_90_BASE_PENALTY    2.288159
FOLD_95_BASE_PENALTY    ?

Verticalize is a little CLI tool I've forever been using by Pierre Lindenbaum: verticalize. Easy to compile and I toss it in my ~/bin every time I get a new computer.

Code searching (link) didn't reveal anything, and googling isn't returning anything obvious either.

Does anyone know what conditions must be true for Picard to put a ? where I expect a number?

Here is an example from the output of the tool CollectWgsMetrics:

❯ cat sample.wgs_metrics.txt | head -n8 | tail -n2 | verticalize | grep FOLD
FOLD_80_BASE_PENALTY    1.33476
FOLD_90_BASE_PENALTY    2.288159
FOLD_95_BASE_PENALTY    ?

Code searching (link) didn't reveal anything, and googling isn't returning anything obvious either.

[Verticalize is a little CLI tool I've forever been using by Pierre Lindenbaum: verticalize. Easy to compile and I toss it in my ~/bin every time I get a new computer.]

added 216 characters in body

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edited Jan 14 at 19:30

gringer ♦

15.1k
5
24
83

Does anyone know what conditions must be true for Picard to put a ? where I expect a number?

Here is an example from the output of the tool CollectWgsMetrics:

❯ cat sample.wgs_metrics.txt | head -n8 | tail -n2 | verticalize | grep FOLD
FOLD_80_BASE_PENALTY    1.33476
FOLD_90_BASE_PENALTY    2.288159
FOLD_95_BASE_PENALTY    ?

Verticalize is a little CLI tool I've forever been using by Pierre Lindenbaum: verticalize. Easy to compile and I toss it in my ~/bin every time I get a new computer.

Code searching (link) didn't reveal anything, and googling isn't returning anything obvious either.

Does anyone know what conditions must be true for Picard to put a ? where I expect a number?

Here is an example from the output of the tool CollectWgsMetrics:

❯ cat sample.wgs_metrics.txt | head -n8 | tail -n2 | verticalize | grep FOLD
FOLD_80_BASE_PENALTY    1.33476
FOLD_90_BASE_PENALTY    2.288159
FOLD_95_BASE_PENALTY    ?

Code searching (link) didn't reveal anything, and googling isn't returning anything obvious either.

Does anyone know what conditions must be true for Picard to put a ? where I expect a number?

Here is an example from the output of the tool CollectWgsMetrics:

❯ cat sample.wgs_metrics.txt | head -n8 | tail -n2 | verticalize | grep FOLD
FOLD_80_BASE_PENALTY    1.33476
FOLD_90_BASE_PENALTY    2.288159
FOLD_95_BASE_PENALTY    ?

Verticalize is a little CLI tool I've forever been using by Pierre Lindenbaum: verticalize. Easy to compile and I toss it in my ~/bin every time I get a new computer.

Code searching (link) didn't reveal anything, and googling isn't returning anything obvious either.

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occurred Jan 12 at 8:19

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asked Jan 12 at 0:00

clintval

143
4

What does a question mark ("?") mean in Picard metrics files when I expect a number (integer, float, etc.)

Does anyone know what conditions must be true for Picard to put a ? where I expect a number?

Here is an example from the output of the tool CollectWgsMetrics:

❯ cat sample.wgs_metrics.txt | head -n8 | tail -n2 | verticalize | grep FOLD
FOLD_80_BASE_PENALTY    1.33476
FOLD_90_BASE_PENALTY    2.288159
FOLD_95_BASE_PENALTY    ?

Code searching (link) didn't reveal anything, and googling isn't returning anything obvious either.

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What does a question mark ("?") mean in Picard metrics files when I expect a number (integer, float, etc.)