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Mar 20, 2018 at 12:25 comment added bapors No, my input does not have special characters, my question was solely theoretical. Perfect!
Mar 20, 2018 at 12:24 comment added terdon @bapors if you mean that bedtools would complain if the modified 1st field would have special characters, then please edit your question to give a representative example of your input data. That said I just tried using the characters &^%*()@#^ and bedtools had no problem.
Mar 20, 2018 at 11:14 comment added terdon @bapors why would the 4th column have special characters?
Mar 20, 2018 at 11:01 comment added bapors Thank you for the answer, it works well. However, would bedtools complain if the $4th column has special characters within?
Mar 20, 2018 at 10:38 history answered dariober CC BY-SA 3.0