HaveI am not sure if it's a v3 or also v2 thing, but have you tried by setting group.by
and label
?
From ?Seurat::DoHeatmap
:
group.by A vector of variables to group cells by; pass 'ident' to group by cell identity classes
label Label the cell identies above the color bar
If you prefer external tools, you can use pheatmap
and setting annotation_col
e annotation_colors
.
First define a data.frame (df) containing the data you want in the bar (clusters in your case)
Description Condition
liver Tumour
lung Normal
Then you have to assign the colours
anno <- as.data.frame(df)
anno_colori <- list(
Condition = c(Normal = '#FFC000', Tumour = '#0070C0'),
Description = c(liver = '#D55E00', lung = '#66CC99')
)
pheatmap(mat,
annotation_col = anno,
annotation_colors = anno_colori,
)
The code above will add 2 bars on the top of your heatmap, one for Condition
and another for Description
.