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Aug 23, 2019 at 9:44 comment added haci Hi user2998764, I was just curious, do the tSNE plot looks "better" after the QC for % mito and genes?
Aug 23, 2019 at 9:22 comment added jxx_fa Great and very comprehensive answer!
Aug 22, 2019 at 18:23 comment added user2998764 Yes, I was missing step where I needed to filter for mitochondria and number of genes.
Aug 22, 2019 at 18:22 vote accept user2998764
Aug 22, 2019 at 13:03 history answered haci CC BY-SA 4.0