I ran dmpfold using this command:
run_dmpfold.sh sequence.fasta sequence.21c sequence.map ./dmpfold-lysin 10 500 &> dmpfold-log.log
It produced files like this:
sequence_sub_embed_1.pdb ..... sequence_sub_embed_500.pdb
And, now I see some more files like this being produced:
sequence_1.pdb .... sequence_2.pdb .....etc
Can you please let me know what is dmpfold doing here? And can I stop dmpfold in between when desired number of models are generated? And, while it is running, can I move the previously made pdbs to new location becuase of disk space issues or all pdbs have to be in the "dmpfold-lysin" as stated in the command-line above? Thanks.