I ran this command:
run_dmpfold.sh sequence.fasta sequence.21c sequence.map ./folder 10 500
From my previous discussion, I understand that I should run with default "run_dmpfold.sh" parameters i.e.
3 50; however, since I have already run the
10 500 I have some questions.
I see that after generating "sequence_1.pdb to sequence_500.pdb" files, these files are no more in the folder and, now I see "ensemble_1.pdb". Will there be more ensemble files like "ensemble_500.pdb" and "sequence_n.pdb" files? I mean when can I expect "final_1.pdb' file? Also, I see files like "CLUSTERS_001.pdb".