I am running rosetta ab initio prediction using the command line:
"mpiexec -np 16 /main/source/bin/AbinitioRelax.mpi.linuxgccrelease -database /main/database/ @options -mpi_tracer_to_file log > log1.log &"
"Options" file looks like this: https://ibb.co/V9VrQHV
RMSD vs Energy plot is: https://ibb.co/1mjzwDj
There is no native structure as this is an ab initio prediction. Could you please let me know about your comments on the RMSD being 0.00 for all 2000 models generated till now? Is this normal and will produce results after more runs?