I have a selected Arabidopsis Genome Initiative (AGI) list for RNA seq and proteomics data, how can I map them to metabolic pathway maps to vilualize(e.g. TCA cycle / FA / Photosynthesis) in KEGG or AraCyc or any freely available pathway maps?

Could someone share an example if possible?


KEGG has a webtool for this, KEGG Mapper.

You can just copy-paste your gene ids in there and see how your pathways are colored.

  • $\begingroup$ Thank you Benn :) $\endgroup$ – Dendrobium Sep 24 '19 at 8:29

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