1
$\begingroup$

I have a selected Arabidopsis Genome Initiative (AGI) list for RNA seq and proteomics data, how can I map them to metabolic pathway maps to vilualize(e.g. TCA cycle / FA / Photosynthesis) in KEGG or AraCyc or any freely available pathway maps?

Could someone share an example if possible?

Improve this question
$\endgroup$

1 Answer 1

Reset to default
1
$\begingroup$

KEGG has a webtool for this, KEGG Mapper.

You can just copy-paste your gene ids in there and see how your pathways are colored.

Improve this answer
$\endgroup$
1
  • $\begingroup$ Thank you Benn :) $\endgroup$
    – Dendrobium
    Commented Sep 24, 2019 at 8:29

Your Answer

By clicking “Post Your Answer”, you agree to our terms of service and acknowledge you have read our privacy policy.

Not the answer you're looking for? Browse other questions tagged or ask your own question.