Is there a best practices for mapping Oxford Nanopore files to a reference?
Is there a tool that can take a tarball of fast5 files and map them directly or do they need to be converted to fastq first?
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Fast5 files need to be converted to fastq first prior to mapping. There are currently no tools available to map the entire raw signal directly to a reference, although a few tools are available for identifying short sequences within the raw signal.
