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I'm familiar with the sQTL and eQTL GTEx data that can be downloaded from the GTEx Portal, but I'm interested in gathering at least two other types of molecular QTL datasets:

  1. Larger eQTL and/or sQTL datasets (greater overall sample size, even if performed only for blood cells)

  2. Other functional molecular QTLs such as methylation QTLs, histone QTLs, DNA accessibility QTLs, etc.

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The largest eQTL datasets I can think of is probably eQTLGen. This is a meta-analysis of many studies using >30,000 samples from whole blood. This might be less ideal if you want cell-type-specific QTL information.

For other molecular QTLs, I do not think there are large-scale datasets yet.

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