Before I do this myself...

Is there any compiled batch-corrected dataset of the major scRNA-seq atlases (Mouse Cell Atlas, Mouse Organogenesis Atlas, Mouse Gastrulation Atlas, Tabula Muris, Tabula Muris Senis, etc.) with processed spliced AND unspliced count matrices?

I would be surprised if there is, but in the event there isn't, are there new pipelines in development that will make processing of raw data easier for studying RNA velocity?


I am not sure if there are preprocessed datasets available, however, Kallisto + Bustools was designed specifically for the rapid quantification of spliced and unspliced transcripts.

| improve this answer | |
  • $\begingroup$ I hear there's an even easier pipeline/container in the works that automates Kallisto + Bustools $\endgroup$ – sissypants Jan 14 at 19:51

Your Answer

By clicking “Post Your Answer”, you agree to our terms of service, privacy policy and cookie policy

Not the answer you're looking for? Browse other questions tagged or ask your own question.