I would like to know however if there tools that describes tandem repeats around a reported variant (TR) up to 6 repeated bases. I can imagine 3 different scenarios:
chrK posY C G TR of (ATC) ____________v ATCATCATCATCGATGATAC
chrK posY A T TR of (AACT) v____________ CAGTCGATTGGATAACTAACTAACT
chrK posY C A TR of (AG) TR of (AG) ____________v__________ AGAGAGAGAGAGCAGAGAGAGAG
If you know any tools in mind that can be used for VCFs, I'd really appreciate citing them.
Thanks in advance.