so I'm fairly new to using linux and blast - have encountered an error in my work.
I have created a fasta database with the results in this directory path:
I'm currently trying to run a search against my created database against query sequences in a file called
My code is as follows:
blastn -db $db -query seqs.fas -out q1results.txt
However I keep getting this error:
Error: Too many positional arguments (1), the offending value: seqs.fas
Error: (CArgException::eSynopsis) Too many positional arguments (1), the offending value: seqs.fas
I'm not sure what I'm doing wrong here, and would appreciate any advice to fix this, thanks!