I am using a few clustering algorithms as well as my own tool for protein sequences. Also, I have benchmarked clustering results (i.e. ground truth) to compare with the results. Is there any tool/software/script to generate evaluation metrics for the clustering results.
The clustering results/benchmarked are in the following format
1 Name1 1 Name2 2 Name3 2 Name4 2 Name5 .....
UPDATE: I am evaluating the clustering performance using scikit