I am having issues with some prokaryote reference genome databases (exact names : ref_prok_rep_genomes.*), that I downloaded from the NCBI website : https://ftp.ncbi.nlm.nih.gov/blast/db/. Files in this database go from
In Linux command line, I was able to launch successfully the bash command
blastn -query (my_query) -db ref_prok_re_.genomes.* -out (my_output) with indexes from
05, but this does not work from indexes
12 (with the same query and output files). The exact same thing occurs with
blastdbcmd -info -db ref_prok_rep_genomes.*.
Each time the error displayed is the same:
BLAST Database error: Input db vol does not match lmdb vol.
ref_prok_rep_genomes files are in the same folder. I downloaded them using
wget and extracted them using
tar -zxvf. All
ref_prok_rep_genomes.* databases (indexes
nsq files. The folder also contains
ref_prok_rep_genomes files (without numbers), with
nto extensions respectively, as well as
Do you guys have an idea of what's going on?
Thank you very much for your time :)