I want to use RDKit with a python script in PyMOL. RDKit requires a conda environment, so I think I need to be able to specify that the instance of python that I want to use would be in that environment, instead of the default for PyMOL, so that I can run it through PyMOL. The script I made is working for me through PyCharm when I test it, by using the RDkit environment "rdkit-env" as my python interpreter, with all of the additional modules I need installed there as well.
I would like to run it through PyMOL so I can add some PyMOL specific functionality as well. I've tried using shebang to specify the RDkit environment that I made, but that does not seem to be working for me with Windows.
Could someone please help me figure out what other approach might work for this? I'm new to this area, so I would appreciate any insights. Thank you!