I have used DOCK software to dock 10 ligands into the protein structure.
I want to generate a pdb file that contains all 10 binding modes of the ligands together with the protein. So all together in one pdb file.
Now, what I want to know is when I give this file to LIGPLOT, is it possible to generate something like:
%polar interactions XX %non-polar interactions XX %hydrogen interactions XX
Is there a way to do it with LIGPLOT, if now is there some other software that can be recommended for this type of assessment?
I have been having hard time, trying to find a way or software that can perform similar type of calculation and give me similar type of output that I want.