I want to use
MEGAHIT (git: https://github.com/voutcn/megahit) to assemble metagenome shotgun sequencing reads (illumina).
I install the package with the command
conda install -c bioconda megahit as described in on the github page which yields:
Solving environment: done ## Package Plan ## environment location: /home/datura-workstation/miniconda3 added / updated specs: - megahit The following NEW packages will be INSTALLED: megahit bioconda/linux-64::megahit-1.2.9-h8b12597_0 Proceed ([y]/n)?
Where I click yes and the packages is installed. However, after installation I am not able to use the command
megahit as this results in the error:
megahit: command not found.
I use Ubuntu 18.04.3 LTS and have installed
I reproduced the installation of
megahit on a windows computer with a virtual machine using the same Ubuntu version. On my virtual Ubuntu I CAN use the
Could anyone please help me solve this problem? I searched the internet but cannot find a good solution on the issue (also not on the github issue page of this package).