Is there a way to convert a hmmer output to a pandas dataframe? I am also unsure how to load a hmmer tblout table into python via the Bio module. I believe you can call a hmmer format with SeqIO.parse or SeqIO.search. How can you convert the table to a pandas dataframe?
The manual says fields in a tabular output file are space-delimited. It should be fairly straightforward to load a space-delimited file in pandas.
From the manual:
--tblout <f>Save a simple tabular (space-delimited) file summarizing the per-target output, with one data line per homologous target model found.