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I have previously performing Allelic scoring in Plink 1.9 using:

plink \ 
--score sum sumstats.txt\

However, it seems this has changed in Plink 2.0. What is the equivalent function for Allelic scoring?

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plink2 --score cols=+scoresums

See https://www.cog-genomics.org/plink/2.0/general_usage#colset and https://www.cog-genomics.org/plink/2.0/score for details.

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  • $\begingroup$ Hi a bit of explanation would be helpful $\endgroup$
    – M__
    May 27 '20 at 1:07

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