I have the following Stringtie RNA-seq output files for several samples in the image below.
For additional context, I have utilized as part of my RNA-seq workflow.
- samtools, and
Additionally I need help with trying to analyze mRNA transcript isoforms as I am completely new to this type of analysis.
Questions Which file outputs should I use and what additional tools/software should I use to analyze mRNA transcript isoforms?
Any help is much appreciated!