I am pretty new to Seurat. I want to subset from my original seurat object (BC3) meta.data based on orig.ident. however, when i use subset(), it returns with Error.
ER_HER_P <- subset(BC3, idents = c("BC03")) Error: No cells found table(Idents(BC3)) BC01 BC02 BC03 BC03LN BC04 BC05 BC06 BC07 BC07LN BC08 BC09 BC10 BC11 21 50 33 51 42 74 15 48 52 21 55 13 11
There are 33 cells under the identity. I checked the active.ident to make sure the identity has not shifted to any other column, but still I am getting the error?
head(BC3@active.ident)  BC01 BC01 BC01 BC01 BC01 BC01 Levels: BC01 BC02 BC03 BC03LN BC04 BC05 BC06 BC07 BC07LN BC08 BC09 BC10 BC11